Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 480 / 9e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 423 / 8e-136 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 340 / 4e-104 ADR1-L1 ADR1-like 1 (.1.2) AT5G04720 335 / 1e-102 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT5G47280 318 / 5e-98 ADR1-L3 ADR1-like 3 (.1) AT1G33560 310 / 3e-93 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66890 253 / 3e-76 Leucine-rich repeat (LRR) family protein (.1) AT5G66630 153 / 2e-38 DAR5 DA1-related protein 5 (.1) AT2G14080 105 / 5e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G35450 101 / 1e-21 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039300 [exp] 645 / 0 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039100 [exp] 577 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 420 / 2e-136 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 377 / 2e-123 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.014G035700 [exp] 343 / 2e-105 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.002G129300 [exp] 341 / 1e-104 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.005G007001 [exp] 125 / 4e-29 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 122 / 4e-28 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 120 / 9e-28 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022464 [exp] 592 / 0 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007359 [exp] 582 / 0 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 529 / 4e-177 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10021769 [exp] 255 / 6e-71 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10034761 [exp] 218 / 6e-62 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10016770 [exp] 207 / 3e-56 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10032759 [exp] 171 / 2e-44 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033299 [exp] 140 / 6e-38 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10018616 [exp] 131 / 6e-31 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 120 / 2e-27 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [poplar] [flax] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 CL0023 [poplar] [flax] P-loop_NTPase PF13401 [poplar] [flax] AAA_22 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.007G038700.2 pacid=42766087 polypeptide=Potri.007G038702.1.p locus=Potri.007G038700 ID=Potri.007G038700.2.v4.1 annot-version=v4.1 ATGGAATGTGTTGTTGCTGGTTTTGTTGCAGAGAAAGTATTAGGGGAGTTGTTAAAATCTGTGAAGGAAGCGATGAGGAAAAAGAAAAAGTTAGAAACTA CCTTGAAGAGCATCGAATCCACACTCAACTCTATAATTCCAGTCGTTGAAAGCATAAATGAGTTAAACGAAAAATTAGATCGTGAAGATGAGGACATAGG GAGATTGTGGAAACAAATAAAAGAAGGGCAGGAACTTGTTAGCAAATGCTCAAAAGGAAATTGCTGTGGTTCTTGCTTTAAACAGTCTAATTGCACTGAG GAACTTAGAGATTTCGATCATTCACTTAAAAGTTTCTATGATTTTGTGCAAGAAGTGAAAGAAGTTCGTGAAGAGGTGAAAGTAACTCACGTTGGTGTGA AAGACATCCAAGTGCAAGTCAAAGAAATTCATGAGGAGGTGAAAGATATGCGTAAGGATCTTCGTTCAAATATTCAAACAGAAAAGGCAGCCAGTCCTAT GTCAAATAGCAATGTACCTTTGTGGCCTTTTACGCCTCCAGAGCCACCACAGATTACTGTTGGATTGGACAAGCCAACGAAAGATTTAAAGAATGAATTA TTCAAGGATGGAATGTCCACGGTTGTATTAACAGCTCCTGGTGGATGTGGAAAGACCACATTGGCTAAAAAACTTTGTCATGATGAAGCTATTAAAGAAA AATTTAAAGATAATATCTTCTTCATCACTGTCTCAAAATCACCCGATCTGAAGGTCATTATACAGCAGCTATTTCGGCATAAGGGTCATTCGGTCCATGA GTTTCGAACTGATGAAGAAGCAGTAAACTGCTTGGAGCAATTGCTGAAGCAAATAGGAACAAAGCCTATATTATTGGTCCTCGATGATGTTTGGTCGGGA TCAGAGAGCCTTCTGGAAAGGTTCAAGTTCCAAATACCAGGATACAAGATTTTGTTGACATCAAGATCTTCACTCGGTGGATTTGGTTCGAAATATAAAT TGGATACGTTGAATTATGAAGACTCCCTGAGTCTATTTAGACAGTCAGCGGAGCTACGGAATAGCACCTCTAACAATGTAGAAGATGATGTTTTGAAGAA GATAGTGAGCTTTTGCAAGGGATTTCCACTAGCTCTTTCAGTCGTAGGCCGTTCACTCCGCCAACAACGACCAGAGATATGGAGAAATAAAGTGAAGCAA TGGTCAAAAGCTGGGGCTTTTTTTGAATCCAATAATGATCTGTTTACTTGTCTAAAGAGTAGCTTAGATGCGTTGGATAATAAGCTGAAGGAATGTTACA TTGACTTGGGAGCATTTCCTGAAGGTCAACTGATATCTGCCAGTGCCATCATTGACATGTGGGAGGAGTTGTATGAAATGAATGGAGATGGTCTGAACTC CATATCAAACCTCCATGAACTATCCTCCTTGAATCTCATTGATCTGGTAGATACAAGGAGGGATGGAAGTGAAAGAGAGAACTATAATGAAACCTTTGTC ACACAGCATGACCTTCTTAGGGATCTGGTCAACCATGTTAGCGGATTGGCTGGTTCAGAACAGGGGAGGAAAAACCTAGTTGTGGACATAAATGGAAATG AATTTCGGGGCTGGTGGAAGAATCAAACAATCAGCGCCCATGTCTTGTCGATCTCCACAGATGAAACTTTCTTGTCAAATTGGCCCAACATTCAAGCTCC TGAAGTTGGGGTTCTAGTTCTCAATTTTCGTACGAAGAAGTACACATTACCCAAGTTCATCAAGAGCATGGATAAACTAAAGACTTTGATCCTCACAAAT TATGGTTTTTTCTCAGCTGAAATAAGTAACTTTATAGTTCTTGGAAACCTGTCCAATCTAAAGAGGATCAGGTTGGAGCAGGTTTTGATTCCTTCCCTTA CCATTAACTGTGTGCAGTTAGAAAATCTGCAGAAAATATCGTTGATCGGGTGTAATATTGGTCCGGCCTCCGGTGACAAAGCTATCCGGATTTCAGATGC ACTGCCGAAACTAGTGGAGATCAACATTGGCTACTGCAATAGTCTGAATGAATTGCCTGTTGGACTCTGTGATATTGTCTCCCTAAAGAAACTTCGCATC ACCTACTGTCCAGGCCTGTCAATATTGCCTCGAGAAATCGGAAAGATGGTGAATTTGCAAGTCTTGATGCTTAGCTCCTGCAGAAATTTGTCAGATTTGC CAGACACTATTGGAAGCCTCCATAAACTGAGCATTCTTGACATATCAGACTGTATTAGCATTAAGAATTTGCCAGAACAGATTGGCGAGCTGCAGAGTCT AAAAAAGCTTTACATGACAGGATGCTCAAATTGCAGGTTACCTAACTCAGTCACCACTCTTCATAGTTTGAAGTCCGTGATCTGCGATGAAGAAACAGAG AAATCATGGAAACCTTTCAAGCGCGACCTCCCAAACACGTTGATTTTAATAGGTGAAGATTTGAGTTTAAACCAATAA
AA sequence Show only first row Show all	>Potri.007G038700.2 pacid=42766087 polypeptide=Potri.007G038702.1.p locus=Potri.007G038700 ID=Potri.007G038700.2.v4.1 annot-version=v4.1 MECVVAGFVAEKVLGELLKSVKEAMRKKKKLETTLKSIESTLNSIIPVVESINELNEKLDREDEDIGRLWKQIKEGQELVSKCSKGNCCGSCFKQSNCTE ELRDFDHSLKSFYDFVQEVKEVREEVKVTHVGVKDIQVQVKEIHEEVKDMRKDLRSNIQTEKAASPMSNSNVPLWPFTPPEPPQITVGLDKPTKDLKNEL FKDGMSTVVLTAPGGCGKTTLAKKLCHDEAIKEKFKDNIFFITVSKSPDLKVIIQQLFRHKGHSVHEFRTDEEAVNCLEQLLKQIGTKPILLVLDDVWSG SESLLERFKFQIPGYKILLTSRSSLGGFGSKYKLDTLNYEDSLSLFRQSAELRNSTSNNVEDDVLKKIVSFCKGFPLALSVVGRSLRQQRPEIWRNKVKQ WSKAGAFFESNNDLFTCLKSSLDALDNKLKECYIDLGAFPEGQLISASAIIDMWEELYEMNGDGLNSISNLHELSSLNLIDLVDTRRDGSERENYNETFV TQHDLLRDLVNHVSGLAGSEQGRKNLVVDINGNEFRGWWKNQTISAHVLSISTDETFLSNWPNIQAPEVGVLVLNFRTKKYTLPKFIKSMDKLKTLILTN YGFFSAEISNFIVLGNLSNLKRIRLEQVLIPSLTINCVQLENLQKISLIGCNIGPASGDKAIRISDALPKLVEINIGYCNSLNELPVGLCDIVSLKKLRI TYCPGLSILPREIGKMVNLQVLMLSSCRNLSDLPDTIGSLHKLSILDISDCISIKNLPEQIGELQSLKKLYMTGCSNCRLPNSVTTLHSLKSVICDEETE KSWKPFKRDLPNTLILIGEDLSLNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66900			Disease resistance protein (CC...		Potri.007G038700 [exp]	0	1
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G101950 [exp]	6.00	0.8696
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G101900 [exp]	7.00	0.8682
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	12.36	0.8777
AT1G67856			RING/U-box superfamily protein...		Potri.010G047100 [exp]	12.84	0.8562
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	14.69	0.8672	ATCSLD4.1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	15.00	0.8697
					Potri.010G070301 [exp]	17.74	0.8458
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	27.00	0.8579
AT2G20430		RIC6	ROP-interactive CRIB motif-con...		Potri.002G035500 [exp]	28.28	0.8508
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	28.28	0.8567	ACO1

Compare expression of checked genes

Potri.007G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.