Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 335 / 5e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66890 304 / 2e-100 Leucine-rich repeat (LRR) family protein (.1) AT5G66910 305 / 4e-96 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 301 / 1e-94 ADR1-L1 ADR1-like 1 (.1.2) AT1G33560 282 / 6e-88 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47280 271 / 4e-85 ADR1-L3 ADR1-like 3 (.1) AT5G04720 275 / 7e-85 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT1G69550 105 / 2e-24 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G04220 95 / 9e-21 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 93 / 5e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039100 [exp] 655 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039300 [exp] 449 / 8e-152 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 397 / 1e-131 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 342 / 3e-112 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G129300 [exp] 293 / 1e-91 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.014G035700 [exp] 280 / 1e-86 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.007G039201 [exp] 120 / 6e-33 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.005G031899 [exp] 89 / 1e-18 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030700 [exp] 89 / 1e-18 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022464 [exp] 457 / 6e-155 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007359 [exp] 381 / 1e-124 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 313 / 7e-100 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10016770 [exp] 260 / 2e-79 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10021769 [exp] 186 / 2e-51 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 105 / 2e-24 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10018616 [exp] 84 / 4e-17 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 81 / 3e-16 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001788 [exp] 67 / 1e-11 AT1G69550 142 / 2e-34 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10020886 [exp] 64 / 1e-10 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G038900.1 pacid=42765168 polypeptide=Potri.007G038900.1.p locus=Potri.007G038900 ID=Potri.007G038900.1.v4.1 annot-version=v4.1 ATGGACCTTGGTTCATTCCCTGAAGACCAGAGGATTCCTGCCACTACCCTTATTGATATGTGGGCAGAATTGTATAACCAAGATGAGGACGACGCCATTG CCAATCTCCATGAACTCTCTGATAGGAATCTGATTGAAGTTGTAGTTACAAGGAAAGATGCAAACGAAGACGATGGGTCCTATAATGAGCATTTTGTCAT GCAGCATGACCTGCTCAGGGAGCTGGCCATCCGTGGAAGCAACTCAGGAAACATTGAGCACAGGAAACGAGTATTATTGGAGATAATTGAAAATAAAATC CCTGAGTGGTTGATGGAACAAGATCAGCTATCAATCAGGGCCAAACTCTTATCTATCTCAAAAGATGAAACATTCTCATCAAGTTGGTCCACCATGCAAG CGCCGGAAGTTGAGGTTTTACTTCTGAATTTTCAGACACAGAAATACTCATTGCCTGAGTTCATAGAAAGAATGAATAAGCTAAAAGTTTTAGTACTTCA CAATTACGGGTTCGTTCCAGCCGAATTGAGCAATTTCCCACTTCTTGGTTCTTTATCAAATCTAAAGAGAATAAGACTGGAAAAGGTTTCCATCCCATCC CTTTTCTTGACTTCAATGAAATGGAGGAAGCTAGAAAAGATGTCCTTGGTTATGTGCAATATTGATCAAGCTTTTAATAAATCTACCAACAAGATTTCGG ATGCATTCCCAAAGTTAGTCGACCTCACCATTGACTACTGCAATGATCTGGAGGAATTGCCAACAGGATTCTGTGATCTTGTCTTGCTACGAAAGCTCAG TATCACAAATTGTCATAAGCTTTTGGCACTGCCAGAGGACATGGGAAATTTACTTGATTTGGAGGTCCTAAGGCTCAACTCCTGCATCGAATTGACAGAG TTACCGGGCACAATCGGTAGACTTCATAAGTTGCAGATTCTTGACTTATCCGAATGTCTAAGTGTAACAGAATTGCCAGAACAGATCGGCCAGTTGGATG ATCTGAGAAAGCTCTACATGATAGAGTGCTCAAGTTGTGAATTGCCATCATCAGTTGCGAATCTTGTCCACCTAAAAGAAGTAATAGGCGATCAAGAAAC TGCCATGTCATGGAATCGTTTCAAACCCTGCCTTCCATCTCTGACGATAAAGGTACATAAGGAAAACAACTTGAACTGGCTTGGTTAG
AA sequence Show only first row Show all	>Potri.007G038900.1 pacid=42765168 polypeptide=Potri.007G038900.1.p locus=Potri.007G038900 ID=Potri.007G038900.1.v4.1 annot-version=v4.1 MDLGSFPEDQRIPATTLIDMWAELYNQDEDDAIANLHELSDRNLIEVVVTRKDANEDDGSYNEHFVMQHDLLRELAIRGSNSGNIEHRKRVLLEIIENKI PEWLMEQDQLSIRAKLLSISKDETFSSSWSTMQAPEVEVLLLNFQTQKYSLPEFIERMNKLKVLVLHNYGFVPAELSNFPLLGSLSNLKRIRLEKVSIPS LFLTSMKWRKLEKMSLVMCNIDQAFNKSTNKISDAFPKLVDLTIDYCNDLEELPTGFCDLVLLRKLSITNCHKLLALPEDMGNLLDLEVLRLNSCIELTE LPGTIGRLHKLQILDLSECLSVTELPEQIGQLDDLRKLYMIECSSCELPSSVANLVHLKEVIGDQETAMSWNRFKPCLPSLTIKVHKENNLNWLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	1.00	0.9854
AT5G66900			Disease resistance protein (CC...		Potri.007G039000 [exp]	2.00	0.9554
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.009G086100 [exp]	4.35	0.8577
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	4.47	0.8968
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150000 [exp]	4.89	0.8882
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	6.48	0.9075	Pt-MPK3.2
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.002G196200 [exp]	6.63	0.8303
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	6.92	0.8905
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	7.00	0.8892	Pt-EDS1.3
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	7.07	0.8965

Compare expression of checked genes

Potri.007G038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.