Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 540 / 0 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 495 / 7e-164 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 384 / 4e-121 ADR1-L1 ADR1-like 1 (.1.2) AT5G04720 352 / 3e-109 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT5G47280 347 / 3e-109 ADR1-L3 ADR1-like 3 (.1) AT1G33560 344 / 3e-106 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66890 300 / 5e-94 Leucine-rich repeat (LRR) family protein (.1) AT5G66630 176 / 6e-46 DAR5 DA1-related protein 5 (.1) AT3G50950 119 / 2e-27 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58410 114 / 7e-26 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039100 [exp] 687 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 672 / 0 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 503 / 1e-168 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 449 / 1e-151 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G129300 [exp] 379 / 4e-119 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.014G035700 [exp] 373 / 1e-116 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.007G039201 [exp] 179 / 8e-53 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.005G007001 [exp] 121 / 6e-28 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 118 / 5e-27 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007359 [exp] 811 / 0 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 753 / 0 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10022464 [exp] 664 / 0 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10034761 [exp] 261 / 5e-78 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10021769 [exp] 268 / 3e-75 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10016770 [exp] 226 / 9e-63 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10032759 [exp] 194 / 1e-52 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033299 [exp] 132 / 7e-35 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10005171 [exp] 117 / 1e-26 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10005218 [exp] 115 / 5e-26 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [poplar] [flax] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 CL0023 [poplar] [flax] P-loop_NTPase PF13401 [poplar] [flax] AAA_22 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.007G039300.1 pacid=42766277 polypeptide=Potri.007G039300.1.p locus=Potri.007G039300 ID=Potri.007G039300.1.v4.1 annot-version=v4.1 ATGGCAGCTGAATTGCTTGGCGGAGCAGTGTTCGGAGAGCTGCTAAAAGTAATTGAGAATGTGGCACAAAAAGCCCTCGTGTTCAAGACCAAATTGAAGC AAATACAAGAAACTCTAGAATCCAACATTCCAATTTTAGATGAAATCAAACAGTTGGATGAAGAATTGGATCGTAGAAATGAAGAGATTGAAAAATTAAT GGAAGTGATCAGGAATGGCGAGACGCTCGTTCTTGAATGCTCAAAAATTCGTTGGTATCATTGTTGGAGAAGGCCAAAATACACAGACAAGCTCATCGAG TTAGAAAGATCAATCAACCAATTCTTTCAGACTGTTATGCCAGCGCAAATAGCAAGAGACACCAAAGAAATTCTGTTGGAGGTAAGAGGCCGCAAGGGTT CAGGTTCAAACGGAACGATTGATGGACGTGATGTCTCATGTGCAGTCCCAGAGTCTCTGGTGAATCCTGTTGGATTACAGGTGGCCATAGGAGAATTGAA GATGAAGCTGTTTAAGGATGGGGTGTCTATTGTTGTACTGTCTGCTCCTCCAGGCTGCGGAAAAACAACATTGGCAAGACTACTTTGTCATGATAAAGAA GTTGAAGAAAAATTCAAGGATAACATTTTTTATGTTATTGTGTCGAAAAACACCAACATGGAAGGCATTGTAAGGGCACTATTCAATCATAAAGGTCAGA AGCCCCCAAGTGATTTTCGAAGTGATGAAGATATAGTCTACCGGTTGGAGCAATTTTTGAACAGCATTGGACCAAGTCCAATATTGTTGGTCCTGGATGA TGTTTGGCCTGAATCAGAGTCGTTTCTTGAAAAGTTTATGTTCCAAATCAAAGATTACAAGATTTTGGTAACATCAAGATCTGTATTTCGAAGATTTGGT TCTACATATGAATTAAAACCATTGAATTATGAAGATTCGTTGACTCTTTTCAGAAGCTCCGCATTCCTACCTCATCAGAGCCAGGACATTCCAGATAAAA ATGTTGTCAGCAAGATTGTGAAAGGCTGCAAGGGGTTCCCACTGGCCCTTAAAGTGGTTGGCAGTTCACTCTGTGGAGAGCCTGAAGAAATTTGGAAAAC TAGAGCAATGGAGTTGTCTAAAGTTGGTTCTATTTTTGAATACACTGACCTGCTCAATTCTCTCCAGAAAAGTTTGGATACCTTAGATAACAAGGTTATC TTGAAGGAGTGCTTCATAGACCTATGTTCATTTCCAGAAGATCAAAGGATTCCTGTTAATGCCCTTGTTGATATGTGGATGGAATTGTACAATCTAGATG AAGAAGCATATGCTGTCGCCAAACTCCAGGAACTCTGCAACCGGAATCTAGTTGATCTTGTAGTCACAGGGAACGTTGCTAGTGGCTGCTACAATCAGCA GTTCGCCATGCAACATGACCTTCTTAGAGAGCTAGCCATCTGTCAGAGCGACTCAGAGTCCATTGAGCGGAGAAAAAGACTAATTCTGGAGATAAGTGCA AATAATGTTCCTGCCTGGTGGATGGAACAGAAGCAGCCAAACATTAGTTGCCGCCTCTTGTCTATCTCCACAGATGAAAAGTTCTCGTCAAGTTGGTGCT TCATACAAGCACCTGAAGTTGAGGTTTTGGTTCTTAATGTTCGATCAAAGAACCACACCTTACCAGAGTTCATAAAGAAAATGGAGAAGCTGAAAGTTTT GATAGTCGAGAACTACGGTTTCTTCCCAACTGAATTAAATAATTTCCTACTTCTTGGCTACGTAACCAACTTGAAGAGAATCAGACTGGAGCGTGTTTCA ATTCCTCCCTTTGCCTTCACCACTGTGAAGTTAGAGATTCTACAAAAGCTAACCTTGTATATGTGCAACATTAGTCAAGCTTTTAGTACCTCTACCATCC TGGTTTCAGAAGCATTGCCAAATATAATGGAAATCAACATTGAGTACAGCAATGATCTGATAGAATTACCGGTTGAGATCTGTCTTCTTACCAAGCTAAA GAAACTCAGCATCATCAATTGTCATAAGTTGGTTGCATTGCCTAAAGAAATCGGAAAGTTGGTTAATTTAGAGGTTCTAAGGCTTGGTTCCTGTATTGAA TTGTTGGAGTTACCGAACACAATCGGGGGTCTCTGTAACTTGAGTGTTCTTGACATATCAGAGTGTTTAGGAATTGAAAGATTACCCGAAGAGATCGGCG AGCTGCAAAATCTAAGGCAGCTCCTTATGATGGGCTGCTCATGCAACTGTGAGTTGCCACAATCAATCATGAACCTTGAACATTTGAAGGAAGTCGTCTG TGATGAAGAAACAGCCATTTTGTGGAAACCAATTATGCTTGTTTGCAAGAATTTGAGGATTAAGGTTCAGAAAGAAGAAGTCAACTTAAACTGGCTTTAC AATCATCGTTTTTGA
AA sequence Show only first row Show all	>Potri.007G039300.1 pacid=42766277 polypeptide=Potri.007G039300.1.p locus=Potri.007G039300 ID=Potri.007G039300.1.v4.1 annot-version=v4.1 MAAELLGGAVFGELLKVIENVAQKALVFKTKLKQIQETLESNIPILDEIKQLDEELDRRNEEIEKLMEVIRNGETLVLECSKIRWYHCWRRPKYTDKLIE LERSINQFFQTVMPAQIARDTKEILLEVRGRKGSGSNGTIDGRDVSCAVPESLVNPVGLQVAIGELKMKLFKDGVSIVVLSAPPGCGKTTLARLLCHDKE VEEKFKDNIFYVIVSKNTNMEGIVRALFNHKGQKPPSDFRSDEDIVYRLEQFLNSIGPSPILLVLDDVWPESESFLEKFMFQIKDYKILVTSRSVFRRFG STYELKPLNYEDSLTLFRSSAFLPHQSQDIPDKNVVSKIVKGCKGFPLALKVVGSSLCGEPEEIWKTRAMELSKVGSIFEYTDLLNSLQKSLDTLDNKVI LKECFIDLCSFPEDQRIPVNALVDMWMELYNLDEEAYAVAKLQELCNRNLVDLVVTGNVASGCYNQQFAMQHDLLRELAICQSDSESIERRKRLILEISA NNVPAWWMEQKQPNISCRLLSISTDEKFSSSWCFIQAPEVEVLVLNVRSKNHTLPEFIKKMEKLKVLIVENYGFFPTELNNFLLLGYVTNLKRIRLERVS IPPFAFTTVKLEILQKLTLYMCNISQAFSTSTILVSEALPNIMEINIEYSNDLIELPVEICLLTKLKKLSIINCHKLVALPKEIGKLVNLEVLRLGSCIE LLELPNTIGGLCNLSVLDISECLGIERLPEEIGELQNLRQLLMMGCSCNCELPQSIMNLEHLKEVVCDEETAILWKPIMLVCKNLRIKVQKEEVNLNWLY NHRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66900			Disease resistance protein (CC...		Potri.007G039300 [exp]	0	1
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	2.23	0.8054
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	3.74	0.8454
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	3.87	0.8233
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	6.16	0.8301
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.017G060000 [exp]	6.32	0.7830	SBP.2
AT1G60670			Protein of unknown function (D...		Potri.008G145100 [exp]	7.74	0.7978
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Potri.019G063700 [exp]	11.74	0.7457
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	12.80	0.8142
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089800 [exp]	16.97	0.7448
AT4G10790			UBX domain-containing protein ...		Potri.015G080200 [exp]	20.97	0.7911

Compare expression of checked genes

Potri.007G039300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.