Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 510 / 5e-173 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 340 / 3e-105 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 320 / 9e-101 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT4G08500 236 / 8e-69 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G09000 236 / 2e-68 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 230 / 7e-67 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G06030 226 / 4e-65 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 222 / 3e-64 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 215 / 3e-60 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 218 / 9e-60 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135100 [exp] 932 / 0 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 446 / 1e-147 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 446 / 3e-147 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 347 / 8e-108 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 344 / 7e-107 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 340 / 4e-105 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 337 / 3e-104 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 316 / 1e-98 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 315 / 2e-98 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019635 [exp] 587 / 0 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 571 / 0 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 535 / 7e-176 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 485 / 1e-165 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 436 / 4e-142 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032279 [exp] 347 / 7e-108 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 346 / 1e-107 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 344 / 1e-107 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 346 / 2e-107 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 312 / 2e-95 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G039800.1 pacid=42766300 polypeptide=Potri.007G039800.1.p locus=Potri.007G039800 ID=Potri.007G039800.1.v4.1 annot-version=v4.1 ATGGCCACGGATGAAAATTTCTCTTCGGTGAGGAGAGGTCATGGCAGTCGTTTTAGTTGGAATAATCCTCGTGGTTTGAGGATAGGTGGTGGTGGTGGTT ATGATTGCCGTGACAGGCCTAGAATTTCAAGGCAAAAGAATCTGAGACATTTGATCGATCAAGACCTTCCAGGTCATCAAAAACAGGTGGCACCACCGGA TCATCATGTGGATTCCGGTGCCCTTTCGAGGTCAACTTCGGCTTCAGTTGCTGTGCCATTGCCGCTTCCATTGCCGGTGCCTTCTGGGGATGGGGATTCG AGGTTTCCTTCGCCCAAGGAGAGGATTCGAGATGGTTTTAGGGAAAGAGAAAGAGACAGAGGTGATAGGATTGGAGAGGGATTATATCCTTCGAATTCTC CTATTTCTAGTGTTTTTGCTGGTCGAAACATGAAGAAAATGGCTGAGCGTTTAGACACTCGGTCATCCAGGACGGTGCGTCCAGATTTCAGTTCTGCACA GAGTTCTCGAGACAACTTCGAGATCAATATTCCTATTAGGAGTGCTCCTACTAGTCCATTTGCAAGCCCTGTTCATAGCCCACCAAGAACGAGTAGCACT GCTGGTATGTTTCCTTACTACCGCATGATTGCTAGAGAACAGAAAGTCTGGTCTGCACCAGAGATGGCAGCATTAGACACACCTGGGCTTCCTCCTCCAG CATTCATGGATGTCAGTGCTTTTAGTAATGACAGTTCTCCTCTTCAAAGTCCATCAAATATAAGTCCCCGCCGGAGAGCCAGAAGCCCAACTGGACCTTT ATCGCCATTGACTTCCAGGTCATCAATCGAAAGCTCAGCTGCACGGCGTGAAAGCAATGCTAATTTTGAGGTCCACCCATTACCTCTTCCTCCAGGAGCA GCTGTCCCTTCGCCATCAGTGCCAGTGCCTATAGCTCTACATAAACCGGAGTTCCCATCTATGAAAAGTCAGTGGCAGAAGGGGAAGCTTATTGGACGCG GTACATTTGGAAGTGTTTATGTTGCCAGCAATAGGGAAACTGGGGCATTATGTGCAATGAAGGAAGTGGAAATGTTTCCTGATGACCCGAAATCTGCCGA GTCTATAAAGCAATTAGAACAGGAAATTAAAGTTCTTAGCCAGCTGAAGCATCCAAACATTGTGCAGTATTATGGTAGTGAAGTAGTTGATGACAAATTC TATATATATCTGGAGTATGTTCATCCGGGTTCAATCAATAAATACGTACATGAACATTGTGGAGCCATAACAGAAAGTGTTGTTAGTAATTTTAGTCGCC ATATCGTCTCTGGGCTAGCTTACTTACACAGCATGAAGACAATACACAGGGATATAAAAGGGGCTAATTTGCTTGTTGATGCATCTGGAGTTGTGAAGCT TGCGGACTTTGGGATGGCAAAACTTCTTACTGGACAAGCAGCTGATCTTTCTCTTAAGGGAAGCCCTTACTGGATGGCTCCTGAGCTCATGCAAGCTGTA ATGCAAAAGGATGTTAGCTCCGACCTTGCTCTTGCTGTTGATATTTGGAGTTTGGGATGCACTATTATTGAAATGTTCACTGGGAAACCTCCTTGGAGCG AGTATGAGGGGGCTGCAGCCATGTTTAAAGTGATGAGGGATAGCCCAGGTATACCTGAAATATTATCACCTGAGGGCAAGGATTTTTTGCGCTGTTGCTT TCGAAGAAACCCAGCAGAGAGACCAACAGCTGCCATGCTACTAGATCATCGGTGGTTGAAAAACTGTCAGCACGTCAATGTCTCATATACCATCCAGTCA ATCAATGGGATAAAATTGACTGATATATCCCAAAGTCGAAGAGCATCTGAATTCAAGTCTGATCATCTACCAGGATTACCAAGCTCAAAAGGTACCAAAG GAAAGGCGACTTCTGACAGCTACATGCATTATTCTTTTTCTCCAGCAAGACTGTCCAACGACCTCGCCATGAAACTTCCAACTTAA
AA sequence Show only first row Show all	>Potri.007G039800.1 pacid=42766300 polypeptide=Potri.007G039800.1.p locus=Potri.007G039800 ID=Potri.007G039800.1.v4.1 annot-version=v4.1 MATDENFSSVRRGHGSRFSWNNPRGLRIGGGGGYDCRDRPRISRQKNLRHLIDQDLPGHQKQVAPPDHHVDSGALSRSTSASVAVPLPLPLPVPSGDGDS RFPSPKERIRDGFRERERDRGDRIGEGLYPSNSPISSVFAGRNMKKMAERLDTRSSRTVRPDFSSAQSSRDNFEINIPIRSAPTSPFASPVHSPPRTSST AGMFPYYRMIAREQKVWSAPEMAALDTPGLPPPAFMDVSAFSNDSSPLQSPSNISPRRRARSPTGPLSPLTSRSSIESSAARRESNANFEVHPLPLPPGA AVPSPSVPVPIALHKPEFPSMKSQWQKGKLIGRGTFGSVYVASNRETGALCAMKEVEMFPDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSEVVDDKF YIYLEYVHPGSINKYVHEHCGAITESVVSNFSRHIVSGLAYLHSMKTIHRDIKGANLLVDASGVVKLADFGMAKLLTGQAADLSLKGSPYWMAPELMQAV MQKDVSSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDSPGIPEILSPEGKDFLRCCFRRNPAERPTAAMLLDHRWLKNCQHVNVSYTIQS INGIKLTDISQSRRASEFKSDHLPGLPSSKGTKGKATSDSYMHYSFSPARLSNDLAMKLPT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.007G039800 [exp]	0	1
AT1G23110			unknown protein		Potri.010G111300 [exp]	6.92	0.7681
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	11.66	0.8200
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	14.49	0.8075
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	16.34	0.7930
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	18.49	0.7837
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017666 [exp]	21.54	0.7811
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	23.23	0.7533
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	27.16	0.7750
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.012G043800 [exp]	28.10	0.7731	ATLCB1.3
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.014G081700 [exp]	30.24	0.7582

Compare expression of checked genes

Potri.007G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.