Plant FIBer expression Database

Potri.007G040000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28200 802 / 0 unknown protein
AT4G03430 43 / 0.0007 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G135300
[exp]
44 / 0.0003 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003351
[exp]
842 / 0 AT4G28200 765 / 0.0 unknown protein
Lus10004616
[exp]
831 / 0 AT4G28200 758 / 0.0 unknown protein
Lus10018580
[exp]
45 / 0.0002 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
Lus10039811
[exp]
44 / 0.0006 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08640 U3_assoc_6 U3 small nucleolar RNA-associated protein 6
Representative CDS sequence
>Potri.007G040000.1 pacid=42766436 polypeptide=Potri.007G040000.1.p locus=Potri.007G040000 ID=Potri.007G040000.1.v4.1 annot-version=v4.1
ATGGCGGACACAGTCCAATACAAGCTCGAACGGATGGTCGACGAGCTAGACGACCTAGAACGTAAAGGCATATTCACGCGGCAAGAAATAGCAGAGATAG
TGAAACAAAGAAGAAAATTTGAGTACAGATTGAAGAGGCCAAGTCCTTTAAAGCAAGATTTCTTAGCATATATTGATTACGAGACTCAACTTGACTCACT
ACGTAGACTACGAAAGAAATCAGTGGCGCGCGAGCTGGAGAAGCAAGGGGATAAGAGGAGGAGGAGAAATAAAAAGTCTGTTTCTGACTTTGCTGGGATT
TCAAGGATTGTTGAGATTTATAGAATTGCTGTTATGAGGTTTAAGGGAGATTTAGAGCTTTGGTTTAGGTATTTGGAGTTTTGTAAGGATAAAAAGAATG
GAAGAATGAAAAAGGTTTTGGCTCAATTAATTAGGTTTCATCCAAAGGCGCCTGGAGTTTGGATTTATGCTGCAGCTTGGGAATTTGATCATAACTTGAA
TGTTTCAGCTGCTCGTGCTCTTATGCAGAATGGTTTGAGGGTATGCCCACATTCAGAGGATCTTTGGGTAGAGTATCTTCGGATGGAATTGACATATCTT
AACAAGTTAAGGGTGCGGAAGGTAGCGCTCGGAGAGGAGAAGGAAAATGTGGTTCATGATTACGATATGTTGCTTGATGAAGAAAGGGGAAATGATGATG
GATCAAATGCTGGTACTGAGGTGTCAGAGAAGAAAGTGGATTTGTTTCGAGAGAAAGGTTTGCTCATTCTTCAGACAATCTATACTGGAGCTGTTGAAGC
TCTGCCTTCTAGTTTTGGCTTGAGAAAGAGGTTATTAGAGATACTGGAAGCAACAGACTTGACTCATTCAGAAGAAATGCATAAGGAGATGCTAAGTGAT
ATGAAAAGAGACTTTTCCAGAGAACCAGAATATTGGGACTGGCTTGCAAGACTTGAAATGACTGATTCTAAGAGTATGTCAGAGATGAGCGTAACTCTAG
CGCTTCCTCAGTTTCAAAAGGCAATTCAGGTATATGAGGAGGCTTTACAATTTCTGCCTTCTCCAATGATGTTTAATTTATATATAAAGTTTTTGATGGA
TGCTATTGCTCCCAAAGGAGGAGAAAACGATCCTTCTAAGGTCTCCAGCCCCACTGAAGATTATATTTCACACCTTTTGGTGGTATACGAGAAGGCTGAT
GTGGTGGGATACATGACTGAGGATCTTGCTTGTCAATATGTTTCATTTTACCTGCAACTTGGTAGGTTTGATGAAGCCAGAAAACTTGCAGACAGGCTTT
GCAGCGGAAAACTCTCAGATTCAGAAAAGTTGTGGATTTTAAGGGCCTCTATGGAAATAAAATCTTTTACTGATGATACTTCTGCACCAAGTAAGGATGA
TTTCCAATATGTGTTAGGACTCCTTAGAAGTGCATTGACTAAAGTGTCAATATCACAAGCTGAGGACTTATGGCTAATGGCACTCAATGTTTTTGCAAAA
CAAAAGAAATATCTGGACAAGCTGGTTGAGATATCTCTTATCTCAGTAGCCAAAGATGGTGGTAGTGATGATGGATTTTCCCTCTCTTCTGCTATTGTAA
ATTTTATGCTTCAGAAGGATGGAATTCATAAAGCAAGAAAGACATATAAGCGATTTCTCGCACTACCCCATCCTGGTCTTGTTTTGTACAGATGTTGCAT
CGAGTTGGAAGTGAACCTTGCATCTGTTGGTGATAAGGATTGCCTTGCAAATGCCCGAAAACTATATGAATCTGCACTCGCAACTTATGGCCAAGATGTG
ACCTTGTGGCAAAATTACCACTCGATGGAGATTAAGTTGGGAACATCGGAAACAGCAAATGCTGTTTGTTGGCGTGCACGGAAGACACTCAAAAACTCTG
CTGCATTTGTTGCTGCTCCAGATTTGTACTAA
AA sequence
>Potri.007G040000.1 pacid=42766436 polypeptide=Potri.007G040000.1.p locus=Potri.007G040000 ID=Potri.007G040000.1.v4.1 annot-version=v4.1
MADTVQYKLERMVDELDDLERKGIFTRQEIAEIVKQRRKFEYRLKRPSPLKQDFLAYIDYETQLDSLRRLRKKSVARELEKQGDKRRRRNKKSVSDFAGI
SRIVEIYRIAVMRFKGDLELWFRYLEFCKDKKNGRMKKVLAQLIRFHPKAPGVWIYAAAWEFDHNLNVSAARALMQNGLRVCPHSEDLWVEYLRMELTYL
NKLRVRKVALGEEKENVVHDYDMLLDEERGNDDGSNAGTEVSEKKVDLFREKGLLILQTIYTGAVEALPSSFGLRKRLLEILEATDLTHSEEMHKEMLSD
MKRDFSREPEYWDWLARLEMTDSKSMSEMSVTLALPQFQKAIQVYEEALQFLPSPMMFNLYIKFLMDAIAPKGGENDPSKVSSPTEDYISHLLVVYEKAD
VVGYMTEDLACQYVSFYLQLGRFDEARKLADRLCSGKLSDSEKLWILRASMEIKSFTDDTSAPSKDDFQYVLGLLRSALTKVSISQAEDLWLMALNVFAK
QKKYLDKLVEISLISVAKDGGSDDGFSLSSAIVNFMLQKDGIHKARKTYKRFLALPHPGLVLYRCCIELEVNLASVGDKDCLANARKLYESALATYGQDV
TLWQNYHSMEIKLGTSETANAVCWRARKTLKNSAAFVAAPDLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28200 unknown protein Potri.007G040000
[exp]
0 1
AT5G16750 TOZ TORMOZEMBRYO DEFECTIVE, Transd... Potri.013G079600
[exp]
1.41 0.9282
AT2G19640 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-re... Potri.001G071700
[exp]
2.64 0.8723
AT1G31660 unknown protein Potri.011G112500
[exp]
4.24 0.8922
AT3G55510 RBL REBELOTE, Noc2p family (.1) Potri.008G043400
[exp]
4.69 0.8942
AT5G41190 unknown protein Potri.003G124700
[exp]
5.91 0.8745
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Potri.017G120100
[exp]
6.00 0.8572
AT1G63660 GMP synthase (glutamine-hydrol... Potri.003G128200
[exp]
6.16 0.8446
AT2G28600 P-loop containing nucleoside t... Potri.010G234000
[exp]
6.63 0.8401
AT2G18220 Noc2p family (.1) Potri.001G012800
[exp]
7.48 0.8865
AT5G60990 DEA(D/H)-box RNA helicase fami... Potri.007G068800
[exp]
7.74 0.8501

Potri.007G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.