Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15790 551 / 0 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 215 / 2e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 199 / 2e-63 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 199 / 6e-63 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 197 / 3e-62 ROC1 rotamase CYP 1 (.1) AT2G16600 192 / 2e-60 ROC3 rotamase CYP 3 (.1.2) AT4G34870 190 / 8e-60 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G29960 187 / 2e-58 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 186 / 4e-57 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G58710 183 / 1e-56 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135500 [exp] 645 / 0 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G106200 [exp] 583 / 0 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 567 / 0 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G130100 [exp] 204 / 5e-65 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 202 / 3e-64 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 199 / 4e-63 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.002G021500 [exp] 198 / 7e-63 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 198 / 8e-63 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.002G047200 [exp] 212 / 1e-62 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020992 [exp] 568 / 0 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 568 / 0 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10012059 [exp] 551 / 0 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 487 / 7e-174 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 207 / 2e-66 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 206 / 1e-65 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10017258 [exp] 199 / 6e-63 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10022012 [exp] 196 / 8e-62 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10018746 [exp] 209 / 1e-61 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 209 / 1e-61 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.007G040100.3 pacid=42766262 polypeptide=Potri.007G040100.3.p locus=Potri.007G040100 ID=Potri.007G040100.3.v4.1 annot-version=v4.1 ATGGCAAAGCAAAGATGTTTTTTAGATATAAGTATAGGAGGAGAACTAGAAGGGAGAATAGTAGTGGAGCTTTACAAAGATGTTGTCCCTAAAACTGCTG AGAATTTTAGGGCTTTGTGTACTGGAGAAAAAGGCATTGGACCCAACACTGGTGTCCCTCTTCATTACAAAGGGAGTCGCTTTCATCGTGTTGTTAAAGG TTTTATGGTACAAGGTGGTGACATATCAGCTGGGGATGGAACTGGAGGAGAATCCATCTATGGATTGAAATTTGAGGATGAAAATTTTGAGTTGAAACAT GAAAGAAAAGGAATGTTGTCGATGGCTAATACGGGCCCCGGGACCAACGGGTCTCAGTTTTTTATTACCACCACTCGAACTTCTCATCTAGATGGAAAAC ATGTTGTTTTTGGGAAGGTAATCAAGGGAATGGGCCTGGTTCGTTCTATTGAGCTTATTGTGACTGAGGTGGGTGATCATCCCTCTCAAGATGTAGTGAT TGTTGATTGTGGGGAAATTCTTGAAGAGGAGGATGATGGGGCATCCAACTTCTTTAAAGACGGTGATACTTATCCTGATTGGCCGGCTGATTTAGACAGA AAGCCTGATGAGATTTCTTGGTGGATGAAGGCAGTTGATTCAATCAAAGCTTTTGGAAATGAACAGTACAAGAAGCAAGACTTTAAGATGGCTCTTCGAA AATATCGTAAGGCTTTGCGCTACTTGGATATTTGTTGGGAGAAGGATGATATAGATGAAGAGAAGAGCTCGTCACTGCGGAAGACAAAGTCTCAGATATT TACAAATAGTTTTGCCTGTAAACTAAAGCTTGGAGATAGTAAAGGAGCATTATTGGACACAGACTTTGCCACGTGTGACGGAGAAGACAATGCAAAGGCT TTTTTCCGCCAAGGCCAGTCACATATGGCACTCAATGACATAGATGGTGCAGTTGAAAGCTTCAAGAAGGCTCTAGAATTGGAGCCAAATGATGGTGGAA TAAAGAAAGAGCTTGCCAGTGCTAGGAAGAAGGTTGCTGATAGGCATGATCTGGAGAAAAAGGCCTATGCTAGAATGTTTCAATAG
AA sequence Show only first row Show all	>Potri.007G040100.3 pacid=42766262 polypeptide=Potri.007G040100.3.p locus=Potri.007G040100 ID=Potri.007G040100.3.v4.1 annot-version=v4.1 MAKQRCFLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGSRFHRVVKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKH ERKGMLSMANTGPGTNGSQFFITTTRTSHLDGKHVVFGKVIKGMGLVRSIELIVTEVGDHPSQDVVIVDCGEILEEEDDGASNFFKDGDTYPDWPADLDR KPDEISWWMKAVDSIKAFGNEQYKKQDFKMALRKYRKALRYLDICWEKDDIDEEKSSSLRKTKSQIFTNSFACKLKLGDSKGALLDTDFATCDGEDNAKA FFRQGQSHMALNDIDGAVESFKKALELEPNDGGIKKELASARKKVADRHDLEKKAYARMFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	0	1
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	2.00	0.9269	CPK20.1
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G098800 [exp]	9.89	0.8617
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	10.39	0.9077
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	10.58	0.9147
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	10.81	0.9204	Pt-ADR12.2
AT2G03430			Ankyrin repeat family protein ...		Potri.010G161300 [exp]	12.96	0.8853
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Potri.006G136500 [exp]	13.07	0.9141	TIF3.2
AT3G05560			Ribosomal L22e protein family ...		Potri.010G012700 [exp]	14.14	0.9179	RPL22.5
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.006G072100 [exp]	14.24	0.8949
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Potri.006G218600 [exp]	15.49	0.9048

Compare expression of checked genes

Potri.007G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.