Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 389 / 2e-130 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26330 350 / 2e-115 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48310 345 / 6e-114 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT2G40890 345 / 2e-113 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G31940 343 / 1e-112 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT3G26320 342 / 1e-112 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT2G45550 342 / 3e-112 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G48280 340 / 1e-111 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26180 340 / 2e-111 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT3G26170 339 / 3e-111 CYP71B19 "cytochrome P450, family 71, subfamily B, polypeptide 19", cytochrome P450, family 71, subfamily B, polypeptide 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066600 [exp] 741 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 739 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 732 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 730 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 677 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 611 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 607 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 390 / 2e-131 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 382 / 3e-128 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 711 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 695 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 604 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 394 / 2e-132 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10019457 [exp] 383 / 3e-128 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 373 / 3e-124 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 370 / 7e-123 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 365 / 3e-121 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 364 / 1e-120 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10028897 [exp] 355 / 2e-117 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G040200.1 pacid=42765759 polypeptide=Potri.007G040202.1.p locus=Potri.007G040200 ID=Potri.007G040200.1.v4.1 annot-version=v4.1 ATGGAGATTACTTCCACTTGGGTTTCCTGTGCAGCTCCTCTGCTCGCTACCATAACCCTAATCCTCCTCGGCCGCCTCATCCGCCGAAGAAAACTCAACC TACCACCAGGCCCAAAACCATGGCCTATAATCGGAAACCTCAACCTAATGGGTGAACTCCCTCACCGTTCCCTTGAAGCCCTCTCCAAAAAATATGGATC CCTTATGCAGGTCAAATTCGGGTCACACCCTGTGGTTGTGGGCTCTTCAGTAGAAATGGCCAGAGCCATCCTCAAAACTCATGATCTCAGCTTAGCTGGT CGCCCCAAAACTGCATCCGGTAAATATACTACCTACAATTACCAGAATATTACATGGGCACCATACGGACCGTACTGGCGTCAAGCACGTAAACTGTGTC TCATTGAACTTTTCAGCCCCAAACGTCTAGATCAGTTTGAGTATATACGTGTAGAGGAGAACCTGAAGTTTCTAAACACTCTATTCCAGAAAAGAGGGAA ACCTATTACCGTAAGAGATCATTTTTCTGATTTGAGTTTTAGTGTAATTAGTCGTTTAGTGTTAGGAAGAAAATACATGGCCGAATCCGAAGATGAGAAA GACATGTTGTCACTCAAGGAACTCAAAGAAGTGCTTGATGAGATGTTCTTGCTTAATGGAGTGTTGGTTATAGGTGACTTCATTCCGTGGCTTGCTTTCT TGGATCTGCAAGGGTATATTAAGAGAATGAAGGCTGTAGCCAAGAAGATGGATATGTTTATGGAGCATGCGTTAGAGGAGCATCATGCTAGGAGAAAAGG GGTGAAGGACTATGAGCCCAGGGATATGCTAGATATCCTTTTGCAGGTAGCTGATGATCCCAATCTTGAGGTCAAGCTCGACAGAATCGGAGTCAAGGCG TTTACACAGGACTTGATTAATGGTGGAACCGAGAGCTCAGCAGTGACAACCGAATGGGCATTGGCTGAAATCATGAAAAAACCAGAGATTTTTGACAAGG CAACAGAAGAGTTAGATAGAGTAATCGGGAGAGAGAGATGGGTACAAGAGAATGACATTGATAATTTACCATTTATTAATGCAATTGTGAAGGAGACTAT GCGTTTGCATCCAGTGGCACCATTACTTGTGCCCAGACTTGCTCGTGAAGATATTCAAATTGCTGGTTATGATATTCCTAAAGGCACTCGTGTTCTTGTA AATGCTTCAGCTATAGGGAGGGATCCAAGCCTCTGGGACAAACCAAAAGAATTTTGTCCCGAGAGATTCATCGGTAAGAGTGTTGATGTTAAAGGTCATG ATTTCGAGCTGTTACCATTTGGAGCTGGAAGGAGGATATGTCCTGGGTATCCTCTAGGGTTAAAGGTGATTCAAACAAGTGTGGCAAATCTTTTGCATGA ATTCAAATGGAAATTGCCTAATAACATGACAGCCAAGGACTTGAACATGGAGGAAATTCTTGGGCTTTCTGCACCCAGAAAAGTCCCGCTTGTTGCTGTT CTGGAGCCTCGGCTTCCATCAGAGCTTTATTCCCTATGA
AA sequence Show only first row Show all	>Potri.007G040200.1 pacid=42765759 polypeptide=Potri.007G040202.1.p locus=Potri.007G040200 ID=Potri.007G040200.1.v4.1 annot-version=v4.1 MEITSTWVSCAAPLLATITLILLGRLIRRRKLNLPPGPKPWPIIGNLNLMGELPHRSLEALSKKYGSLMQVKFGSHPVVVGSSVEMARAILKTHDLSLAG RPKTASGKYTTYNYQNITWAPYGPYWRQARKLCLIELFSPKRLDQFEYIRVEENLKFLNTLFQKRGKPITVRDHFSDLSFSVISRLVLGRKYMAESEDEK DMLSLKELKEVLDEMFLLNGVLVIGDFIPWLAFLDLQGYIKRMKAVAKKMDMFMEHALEEHHARRKGVKDYEPRDMLDILLQVADDPNLEVKLDRIGVKA FTQDLINGGTESSAVTTEWALAEIMKKPEIFDKATEELDRVIGRERWVQENDIDNLPFINAIVKETMRLHPVAPLLVPRLAREDIQIAGYDIPKGTRVLV NASAIGRDPSLWDKPKEFCPERFIGKSVDVKGHDFELLPFGAGRRICPGYPLGLKVIQTSVANLLHEFKWKLPNNMTAKDLNMEEILGLSAPRKVPLVAV LEPRLPSELYSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	2.00	0.9720
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	3.00	0.9723
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	3.16	0.9747
AT3G59710			NAD(P)-binding Rossmann-fold s...		Potri.013G127700 [exp]	3.74	0.9607
AT3G06240			F-box family protein (.1)		Potri.001G318400 [exp]	8.66	0.9494
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	8.83	0.9613
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	11.18	0.9647
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	11.31	0.9571
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	13.07	0.9544	NAC021
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	13.41	0.9527

Compare expression of checked genes

Potri.007G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.