Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 391 / 3e-134 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37050 372 / 4e-126 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37070 353 / 5e-119 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 342 / 1e-114 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 307 / 2e-101 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G29800 106 / 1e-24 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT2G39220 105 / 2e-24 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 100 / 1e-22 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT3G63200 96 / 2e-21 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040400 [exp] 689 / 0 AT2G26560 402 / 8e-139 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133951 [exp] 405 / 8e-140 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 405 / 8e-140 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 405 / 8e-140 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133901 [exp] 405 / 9e-140 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133850 [exp] 404 / 2e-139 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 404 / 4e-139 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128000 [exp] 402 / 2e-138 AT2G26560 543 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134151 [exp] 400 / 7e-138 AT2G26560 509 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000279 [exp] 386 / 2e-131 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 386 / 2e-131 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10009340 [exp] 367 / 1e-124 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10041402 [exp] 119 / 3e-29 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 116 / 3e-28 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10028347 [exp] 105 / 3e-24 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10040394 [exp] 101 / 3e-23 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 97 / 2e-21 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 96 / 2e-21 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10042585 [exp] 60 / 1e-10 AT3G63200 110 / 9e-06 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.007G040300.2 pacid=42765033 polypeptide=Potri.007G040300.2.p locus=Potri.007G040300 ID=Potri.007G040300.2.v4.1 annot-version=v4.1 ATGGCTACTGGTTTTGTTAAGAGAAGGGTGGCAACAGTGCTAAGCATTGATGGAGGTGGCATTAGAGGCATAATTCCGGGTTCCCTTCTTGCCTTTCTTG AATCCAAACTTCAGGAGCTGGACGGGTCACAGGCAAGGATTGCAGATTATTTTGACATCATTGCTGGGACGAGCACTGGTGGACTGGTAGCCACCATGCT TGCAGCTCCTAATAAGGAAAACAGACCCATGTATGCAGCAAAGGACATCATTGACTTCTATTTAGAGCACAGCCCCAAGATTTTCCCTCAGAAAAGTAAC CTGTTAGGTCCGCTGTCAATTTTCTTTGGGGGGCCAAAGTATGATGGGAAGTATCTGAGGTCATTGACGAACAACTTGCTAGGAGACTTGACTATCACAC AGACCCTCACAAATGTTATTTTGCCTACTTTTGACATGAAGCTCCTTCAACCAGTGATCTTCTCCACCACTGAAGGAAAGACTAATGCTTTGAAAAATGC TAGGCTAGCAGACATTTGTGTGGCCACCTCTGCAGCTCCTACGTACTTGCCAGCACACTTCTTCACGACCAAGGATCCCAATGGAACGTCCACTCGCAAT TTCGACCTGATTGATGGTGCGATTGCCGCAAATAATCCTGCATTATTAGCCGTATCTGAGATCCGCAACCAGATCAGGATGAATACCGGTGAATTTGCTG GCGTAAAACCCACTGAGAGAAAGGGTCTAGTCTTGTCGCTAGGAACTGGAGAAGCCAAGTCTGGAGTGACATATGATGCACCCACAGCCGCTAATTGGAG CATGATCAATTGGGTTTCTTACAGTGGCAAAACACCAATTATAGACATGTTTAGTAGTGCAAGCTCTGATATGGTTGACTATCATATCTCCACCCTCTTC CAGTCTCTGGACTCAAAGGAATGGTACCTACGTATTCAGGATGACAAATTGAGCGGGGATGCAGCATCTGTTGACATTGCAACTCCCCAGAACTTGCAAA GGCTTAAAGAGATTGGAGCTGCACTCCTAAAGAAGACAGAGTCTAGAGTGAATTTGGATACTGGCAAGTATGAAGAAATTGAAGGAGGACGTACGAACGA AGCGGCTCTTGCCAAGTTTGCTCAGTTTCTCTCAGATGAAAAAAAATCAATTGATCCCATCCCCATGGCGAATTGCTCCTCTTCTTTATTCTGTAATACC GACAGTGATACGACCAACCTCAAGCGGAAGTACGTAGTTCGGAGCGTCTCTTTCTGTGCTGTTATGATTCCATGA
AA sequence Show only first row Show all	>Potri.007G040300.2 pacid=42765033 polypeptide=Potri.007G040300.2.p locus=Potri.007G040300 ID=Potri.007G040300.2.v4.1 annot-version=v4.1 MATGFVKRRVATVLSIDGGGIRGIIPGSLLAFLESKLQELDGSQARIADYFDIIAGTSTGGLVATMLAAPNKENRPMYAAKDIIDFYLEHSPKIFPQKSN LLGPLSIFFGGPKYDGKYLRSLTNNLLGDLTITQTLTNVILPTFDMKLLQPVIFSTTEGKTNALKNARLADICVATSAAPTYLPAHFFTTKDPNGTSTRN FDLIDGAIAANNPALLAVSEIRNQIRMNTGEFAGVKPTERKGLVLSLGTGEAKSGVTYDAPTAANWSMINWVSYSGKTPIIDMFSSASSDMVDYHISTLF QSLDSKEWYLRIQDDKLSGDAASVDIATPQNLQRLKEIGAALLKKTESRVNLDTGKYEEIEGGRTNEAALAKFAQFLSDEKKSIDPIPMANCSSSLFCNT DSDTTNLKRKYVVRSVSFCAVMIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	7.34	0.7003
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022400 [exp]	10.19	0.6499
AT1G70940		PIN3, ATPIN3	ARABIDOPSIS PIN-FORMED 3, Auxi...		Potri.010G112800 [exp]	10.39	0.6649	PIN3.1,PIN3
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026700 [exp]	13.22	0.6268	Pt-AG12.3
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.017G041800 [exp]	16.24	0.6260	Pt-ADL2.1
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	26.49	0.6229
AT3G62650			unknown protein		Potri.014G124900 [exp]	34.46	0.6128
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G151700 [exp]	42.42	0.5993
AT5G03260		LAC11	laccase 11 (.1)		Potri.007G023300 [exp]	46.32	0.5863
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.004G140900 [exp]	57.86	0.5872	Pt-CYP707.5

Compare expression of checked genes

Potri.007G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.