Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 402 / 7e-139 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37050 377 / 9e-129 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37070 363 / 2e-123 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 352 / 2e-119 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 318 / 5e-106 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G29800 113 / 2e-27 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT2G39220 110 / 1e-26 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 101 / 2e-23 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT3G63200 100 / 2e-23 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040300 [exp] 689 / 0 AT2G26560 390 / 6e-134 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133951 [exp] 421 / 3e-146 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 421 / 3e-146 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 421 / 3e-146 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133901 [exp] 419 / 6e-146 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133850 [exp] 419 / 9e-146 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 416 / 3e-144 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134151 [exp] 414 / 1e-143 AT2G26560 509 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128000 [exp] 409 / 8e-142 AT2G26560 543 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000279 [exp] 397 / 3e-136 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 397 / 3e-136 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10009340 [exp] 374 / 9e-128 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10041402 [exp] 122 / 1e-30 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 119 / 1e-29 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10040394 [exp] 108 / 1e-25 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10038349 [exp] 103 / 5e-24 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10028347 [exp] 102 / 1e-23 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10023512 [exp] 98 / 4e-22 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10042585 [exp] 57 / 7e-10 AT3G63200 110 / 9e-06 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.007G040400.1 pacid=42765505 polypeptide=Potri.007G040400.1.p locus=Potri.007G040400 ID=Potri.007G040400.1.v4.1 annot-version=v4.1 ATGGCTACTGGTTTTGATAAGAGAAGGGTGGCAACAGTGCTAAGCATTGATGGAGGTGGCATTAGAGGCATAATTCCGGGTTCCCTTCTTGCCTTTCTTG AATCCAAACTTCAGGAGCTGGACGGGTCACAGGCAAGGATTGCAGATTATTTTGACATCATTGCTGGGACGAGCACTGGTGGACTGGTAGCCACCATGCT TGCAGCTCCTAATAAGGAAAACAGACCTCTGTATGCAGCAAAGGACATCAATGGCTTCTATTTAGAGCACACCCCCAAGATTTTCCCTCAGAAAAGTAAC CTGTTAGGTCCGCTGTCAGTTTTCTTTGGTGGGCCAAAGTATGATGGGAAGTATCTGAGGTCATTGACGAACAACTTGCTAGGAGACATGACTATCGCAC AGACCCTCGCAAATGTTATTTTGCCTACTTTTGACATGAAGCTCCTTCAACCAGTGATCTTCTCCACCACTGAAGGAAAGACTAATGCTTTGAAAAATGC TAGGCTAGCAGACATTTGTGTGGCCACCTCTGCAGCTCCAACGTACTTGCCAGCACACTTCTTCACGACCAAGGATCCCAATGGAACGTCCGCTCGCAAT TTCGACCTGGTTGATGGTGCGGTTGCGGCAAATAACCCTGCATTATTGGCCATATCTGAGATCCGCAACCAGATCAGGATGCATACCGGTGAATTTCCTG GCGTGGAACCCACAGAGAAAAAGGGTATGCTAGTCTTATCGCTAGGAACTGGAGAAGCCAAGTTTGAAGAGAAATATAATGCATCCACAGCCGCTAATTG GAGCATGATCAATTGGGTTTATAACGGTGGCAAAACACCAATTATAGACATGTTTAGTAGTGCAAGCTCTGATATGGTTGACTATCATATCTCCACCCTC TTCCAGTCTCTGGACTCAAAGGAATGTTACCTACGTATTCAGGATGACAAATTGAGCGGGGATGCAGCATCTGTTGACATTGCAACTCCCCAGAACTTGC AAAGGCTTAAAGAGATTGGAGCTGAACTCCTAAAGAAGACAGAGTCAAGAGTGAATTTGGACACTGGCAAGTATGAAGAAATTGAAGGAGGACGCACGAA CGAAGCAGCTCTTGCCAAGTTTGCTCAGCTTCTCTCAGATGAAAAAAAGCACCGGCAAACCAATTAA
AA sequence Show only first row Show all	>Potri.007G040400.1 pacid=42765505 polypeptide=Potri.007G040400.1.p locus=Potri.007G040400 ID=Potri.007G040400.1.v4.1 annot-version=v4.1 MATGFDKRRVATVLSIDGGGIRGIIPGSLLAFLESKLQELDGSQARIADYFDIIAGTSTGGLVATMLAAPNKENRPLYAAKDINGFYLEHTPKIFPQKSN LLGPLSVFFGGPKYDGKYLRSLTNNLLGDMTIAQTLANVILPTFDMKLLQPVIFSTTEGKTNALKNARLADICVATSAAPTYLPAHFFTTKDPNGTSARN FDLVDGAVAANNPALLAISEIRNQIRMHTGEFPGVEPTEKKGMLVLSLGTGEAKFEEKYNASTAANWSMINWVYNGGKTPIIDMFSSASSDMVDYHISTL FQSLDSKECYLRIQDDKLSGDAASVDIATPQNLQRLKEIGAELLKKTESRVNLDTGKYEEIEGGRTNEAALAKFAQLLSDEKKHRQTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	2.00	0.8001
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	2.44	0.8248
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	3.00	0.7994
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	4.24	0.7747
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	7.34	0.7003
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.012G029300 [exp]	9.64	0.7226
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	9.79	0.7879
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	11.18	0.7856
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034600 [exp]	12.72	0.7680
					Potri.009G035950 [exp]	12.84	0.7546

Compare expression of checked genes

Potri.007G040400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.