Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) AT5G04120 238 / 2e-78 Phosphoglycerate mutase family protein (.1) AT5G22620 68 / 1e-12 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) AT1G22170 60 / 4e-10 Phosphoglycerate mutase family protein (.1) AT1G78050 55 / 2e-08 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT1G07110 47 / 1e-05 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187700 [exp] 73 / 3e-14 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.005G168000 [exp] 61 / 2e-10 AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) Potri.002G093300 [exp] 60 / 5e-10 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.005G078100 [exp] 59 / 1e-09 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1) Potri.003G131200 [exp] 57 / 5e-09 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1) Potri.011G052200 [exp] 52 / 2e-07 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.009G073800 [exp] 48 / 6e-06 AT1G07110 1170 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.001G279100 [exp] 47 / 1e-05 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026068 [exp] 327 / 2e-112 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1) Lus10014360 [exp] 321 / 4e-110 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10020553 [exp] 68 / 2e-12 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10033465 [exp] 61 / 2e-10 AT1G22170 478 / 8e-171 Phosphoglycerate mutase family protein (.1) Lus10020910 [exp] 61 / 3e-10 AT1G22170 476 / 3e-170 Phosphoglycerate mutase family protein (.1) Lus10015442 [exp] 54 / 5e-08 AT5G22620 178 / 1e-52 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10026380 [exp] 45 / 4e-05 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10042278 [exp] 44 / 0.0002 AT1G07110 1122 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10035155 [exp] 42 / 0.0006 AT3G26780 491 / 2e-173 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.007G040700.1 pacid=42766201 polypeptide=Potri.007G040700.1.p locus=Potri.007G040700 ID=Potri.007G040700.1.v4.1 annot-version=v4.1 ATGAGTGCATTGTCCAGGGCAAGTGATACCACCACCTGCCTCAGCCTCCGCCTCCCTTCTTCACCTTTACATTCAAATTTAACTAACACCGTTCCTCTCT GCAGCTTCAAATTCCATATCAATCATAGGTGTAGGCATAGGCATAGCTTAATCTCACCTCACCTACTCAAAACACCCAACCCATTCCCATCCATGGCCCA CTCTAATAATCCCAGTTCTGATACTGTGGATCCTACTTGTGCTGAGATTATTGTAGTGCGTCACGGCGAGACGGTGTGGAATGTTGACGGAAGACTTCAG GGACATATTGATGTGGAATTGAATGAAGTTGGGAGAGAACAGGCAGCTGTGGTGGCTGATAGACTATCCAGGGAATTTAAAGTCTCTGCTGTATATTCTT CTGATTTGAAGAGAGCTTTTGAGACAGCAGAGAAAATCGCTGCTACTTGTGGTATTGCTGAGGTTATTAAGGATCCTGACCTACGGGAAAGACATTTAGG GGATCTTCAAGGCCTTGTCCTTCAAGAAGCTGCCAAAGTTAGTGCTGTGGCTTACCGGGCCTTTAAATCCCACAGAACCAATCAAGATATCCCAGGTGGT GGAGAAAGTCTTGATAAACTTTACGATCGCTGTACATCTTCATTGGAGAGAATTGCTGAGAAGCATACAGGAGAGCGAGTTGTTGTGGTCACTCATGGGG GTGTCATCAGAGAACTGTACCAACGAGCTTGCCCAAATGGAAAGTCTGGAGGAAGGGTATTGAACACGTCTATCAACATCTTCCACATATCTGATGGGGA TCGTTGGACCATTAAAACATGGGGTGATGTTAGCCATCTCAATGAAACAGGATACCTGAAGTCTGGTTTTGGTGGGGACAAAACATCTGGTTAG
AA sequence Show only first row Show all	>Potri.007G040700.1 pacid=42766201 polypeptide=Potri.007G040700.1.p locus=Potri.007G040700 ID=Potri.007G040700.1.v4.1 annot-version=v4.1 MSALSRASDTTTCLSLRLPSSPLHSNLTNTVPLCSFKFHINHRCRHRHSLISPHLLKTPNPFPSMAHSNNPSSDTVDPTCAEIIVVRHGETVWNVDGRLQ GHIDVELNEVGREQAAVVADRLSREFKVSAVYSSDLKRAFETAEKIAATCGIAEVIKDPDLRERHLGDLQGLVLQEAAKVSAVAYRAFKSHRTNQDIPGG GESLDKLYDRCTSSLERIAEKHTGERVVVVTHGGVIRELYQRACPNGKSGGRVLNTSINIFHISDGDRWTIKTWGDVSHLNETGYLKSGFGGDKTSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50520			Phosphoglycerate mutase family...		Potri.007G040700 [exp]	0	1
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	15.74	0.6540
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Potri.008G070400 [exp]	26.45	0.6493
AT5G46020			unknown protein		Potri.011G060800 [exp]	47.43	0.6276
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	49.14	0.6184
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.002G105000 [exp]	55.85	0.6233
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	57.87	0.6168
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	69.34	0.5987
AT5G17280			unknown protein		Potri.007G017200 [exp]	96.11	0.5656
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.001G035800 [exp]	99.96	0.5872
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.010G069800 [exp]	100.99	0.5892

Compare expression of checked genes

Potri.007G040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.