Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50530 942 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 819 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 810 / 0 Protein kinase superfamily protein (.1) AT3G19100 793 / 0 Protein kinase superfamily protein (.1) AT1G49580 792 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G46700 681 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 632 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 615 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 483 / 4e-165 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 456 / 4e-155 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135900 [exp] 1038 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 839 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 835 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 795 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 776 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.002G176700 [exp] 699 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 691 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 675 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.005G113600 [exp] 452 / 2e-153 AT5G66210 870 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002966 [exp] 968 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 780 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 715 / 0 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 657 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10023234 [exp] 619 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10041914 [exp] 464 / 1e-157 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 459 / 6e-157 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10038460 [exp] 376 / 7e-124 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10009078 [exp] 373 / 5e-123 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10000889 [exp] 367 / 2e-120 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G040800.1 pacid=42765815 polypeptide=Potri.007G040800.1.p locus=Potri.007G040800 ID=Potri.007G040800.1.v4.1 annot-version=v4.1 ATGGGTATCTGCACCTCTAAACCCTCCCCAAACTCCACTCTCTCTTCTCCCATCGCTATCCAAGCTAATGACAACTCTATTCCTACCAAGGACACACCTC GACCGGATCCCAGAACCCCAAATGTTAACGATCAGAACAACAGTACCGGCTTAGAATCCGTTAAGAAATCGCCCTTCAATTTTTTCAGCCCGAGTCCGGC TCACTACTTCTTTTCTAAGAAGTCTTCGCCAGCGAGATCTCCGGCGAGGAATGCGGCCAGTGCGAACTCGACGCCGAAGAGGCTTTTTAAAAGGCCGTTC CCGCCGCCGTCTCCGGCGAAGCATATACGGGCAGTGCTTGCGAGGCGGCATGGATCGGTGAAGCCGAACGAGGCGACGATACCGGAAGGAGGCGAGGCGG AGGCGGCAGGGTTAGTTAAGAGCTTTGGATTCTCTAAGCATTTTGGAAATAAGTATGAGCTTGGAGATGAAGTAGGGCGAGGACATTTTGGGTATACTTG TCAAGCCAAGTTTAAAAAAGGTGAACTCAAAGGACAACAAGTTGCTGTTAAAGTAATCCCTAAAGCAAAGATGACTACAGCAATTGCCATTGAGGATGTG AGAAGGGAGGTTAACATACTGAGAGCATTGAACGGGCATAACAATTTAGTACAGTTTTATGATGCCTATGAAGATCATGATAATGTCTATATAGTAATGG AGTTATGTGAAGGAGGAGAACTCTTGGATAGAATTCTTGCAAGAGGCGGAAAATATACAGAAGACGATGCAAAGGCTGTCATGATACAGATATTAAATGT TGTAGCATTTTGCCATCTTCAGGGTGTGGTGCACCGTGATCTTAAACCTGAGAATTTCTTGTTCACATCAAAGGATGAGGACTCCCAGTTGAAGGCCATA GATTTTGGTTTGTCAGATTTTGTAAAGCCAGATGAAAGGTTGAATGACATTGTTGGTAGTGCATACTATGTAGCACCTGAAGTTCTACATAGATCTTATG GTACAGAGGCTGATGTCTGGAGTATTGGTGTGATTGCATATATTTTGTTGTGTGGAAGCCGTCCATTTTGGGCCAGAACTGAATCTGGGATCTTTCGTGC TGTTCTAAAAGCCGATCCAAGTTTTGATGAGACCCCTTGGCCTTCACTTTCTCCAGAGGCAAAAGACTTTGTCAAGCGCCTATTGAATAAAGACCCACGA AAAAGATTGACTGCTGCCCAGGCACTAAGCCATCCTTGGATTAAAAGTTCTAATGAGGTTAAAGTGCCTCTGGATATACTCATACTCAAACTCATGAAGG CTTATATGCGCTCATCATCTCTTCGGAAAGCTGCTTTATGGGCTCTATCTAAAACGTTGACTGTGGATGAGCTATTTTATCTGAAGGAGCAGTTTGTGCT CTTAGAACCAAACAAAAATGGCACTATAAGCTTAGAAAATATTAAAACGACCTTGATGAAAAATTCTACAGACGCCATGAAGGAGTCACGGATTCCTGAT TTTCTAGCATCTCTTAATGCACTTCAATACAGAAGGATGAATTTTGAGGAATTTTCCGCAGCTGCATTAAGTGTCCATCAGCTAGAGGCCCTTGATAGAT GGGAGCAACATGCCCGTTGTGCCTATGAACTGTTTGAGAAGGCTGGGAACAGGGCCATTGTCATTGAGGAGCTGGCATCAGAACTCGGCCTTGGCCCTTC TGTTCCTGTTCATGCTGTTCTACATGATTGGATTCGGCACACTGATGGAAAGTTGAGTTTCCTTGGATTTGTCAAATTGTTGCATGGTGCATCTAGCAGG ACTCTTGCGAAACCTCAATAG
AA sequence Show only first row Show all	>Potri.007G040800.1 pacid=42765815 polypeptide=Potri.007G040800.1.p locus=Potri.007G040800 ID=Potri.007G040800.1.v4.1 annot-version=v4.1 MGICTSKPSPNSTLSSPIAIQANDNSIPTKDTPRPDPRTPNVNDQNNSTGLESVKKSPFNFFSPSPAHYFFSKKSSPARSPARNAASANSTPKRLFKRPF PPPSPAKHIRAVLARRHGSVKPNEATIPEGGEAEAAGLVKSFGFSKHFGNKYELGDEVGRGHFGYTCQAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDV RREVNILRALNGHNNLVQFYDAYEDHDNVYIVMELCEGGELLDRILARGGKYTEDDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKDEDSQLKAI DFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSPEAKDFVKRLLNKDPR KRLTAAQALSHPWIKSSNEVKVPLDILILKLMKAYMRSSSLRKAALWALSKTLTVDELFYLKEQFVLLEPNKNGTISLENIKTTLMKNSTDAMKESRIPD FLASLNALQYRRMNFEEFSAAALSVHQLEALDRWEQHARCAYELFEKAGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGASSR TLAKPQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.007G040800 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	1.41	0.7833
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	4.00	0.7560
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	5.47	0.7552
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	10.90	0.7419
AT1G09160			Protein phosphatase 2C family ...		Potri.013G011600 [exp]	16.12	0.7695
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.018G009400 [exp]	22.49	0.6986
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	25.88	0.7335
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	27.94	0.7309	Pt-SERK2.3
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	34.20	0.7264
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	45.82	0.6845

Compare expression of checked genes

Potri.007G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.