Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50590 2389 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G136300 [exp] 1146 / 0 AT3G50590 815 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009343 [exp] 2218 / 0 AT3G50590 2169 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002967 [exp] 1868 / 0 AT3G50590 1778 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G041000.1 pacid=42765055 polypeptide=Potri.007G041000.1.p locus=Potri.007G041000 ID=Potri.007G041000.1.v4.1 annot-version=v4.1 ATGGAGTGGACAACTGTGCAGCATCTGGATCTACGACATGTCGCTCGTGGTTTTCACAGACCATTACAACCTCATGCTGCTGCTTTTCACCCTACTCAAA CTCTCATTGCCGCCGCGATCGGAACTTACATCATCGAATTTGATGCAGTAACAGGAAGCAAATTATCTTCCATTGACATTGGTGCATCCGTTCTTCGCAT GGCTTACAGTCCTAATACTAGCCATGCTGTTATTGTTATGGTTGAGGATGGTACGATTCGGTCGTGTGATTTTGATACGGAGCAAAGTTGGGTTTTGCAT TCGCCTGAAAAGAAAATGGAACCCTTATCTTTTGATACGGAAGTTCATATGGCTTTGACCCCATTGCAACCTGTTGTTTTTTTCGGCTTCCACCGCAGGA TGAGCGTAACTGTGGTTGGAACGGTTGATGGAGGAAGAGCACCCACAAAAATAAAGACTGATCTGAAGAAGCCTATTGTAAATCTTGCTTGCCATACGCG CCATCCTGTCCTGTATGTTGCTTATGCAGATGGTTTGATTCGAGCTTACAATATTCACTCATATGCTGTTCATTACACATTACAACTTGATAATTCCATT AAGCTAATTGGTGCTGGTGCATTTGCTTTTCATCCAACGTTGGAATGGATTTTTGTTGGTGATAGACGTGGTACCCTTCTGGCATGGGATGTCTCAACAG AGAGACCTAGTATGATTGGAATAACACAAGTGGGCTCCCAACCAATCACATCAATTGCTTGGCTTCCAGCGTTGCGGTTACTTGTTACTGTTTCCAAGGA TGGGACTTTACAAACGTGGAAAACACGAGTGATACTGAATCCCAATAGACCTCCAATGCAAGCAAATTTTTTCGAGCCTGCTGGAATTGAATCAATTGAC ATCCCGCGTATTTTATCTCAACAGGGTGGAGAAGCAATTTACCCTTTACCGAAAATTAAAGCCTTAGAAGCTCACCCCAAACTAAATTTAGCAGCTCTTT TATTTGCAAATATGACTGGTGTTGACAATGTAAAAAGTAGGACTGCTTACACTAGGGATGGAAGGAAACAGCTTTTTGCTGTTCTGCAAAGTGCAAGGGG ATCATCAGCTTCTGTTTTGAAAGAAAAGCTCTCATCATTGGGCTCATCAGGAATTCTGGCAGACCATCAACTTCAAGCACAACTGCAAGAGCATCACCTC AAGGGCCAAAGTCAGCTGACAATTTCAGACATTGCAAGGAAGGCATTCCTTTACAGTCATTTCATGGAAGGCCATGCCAAAAGTGCTCCCATATCTCGGC TGCCTCTCATCACTATTTTGGATACCAAACATCATCTGAGGGACATTCCTGTTTGCCAGCCTATTCATTTGGAGCTAAATTTCTTTAACAAAGAGAACAG AGTACTTCATTATCCTGTCAGGGCGTTTTATCTTGATGGCTTAAACCTCATGGCATATAATTTCTGCTCTGGTGTGGATAATATATACAAGAAACTCTAC ACATCGATTCCTGGAAACGTGGAATACCAAGCGAAGCACATGGTGTACAGTATAAAACAACATTTATTTCTTGTTGTTTATGAATTCAGTGGCTCTGCAA ATGAAGTAGTACTATATTGGGAAAATACTAATGCTCAGCCAGCCAACAACAAAGGAAGCACAATCAAAGGTCGAGATGCAGCATTTATTGGTCCAAGTGA AAGTCAATTTGCAATTCTTGATGAAGACAAGACTGGAGTGGCTCTGTATATTCTGCCAGGAGGAGCTTCAAAAGAAGCTGGTGAAAAAAACTTATTACTC GAAGAAAACCATTTTGCTGAAACAAATGGTGCCTCTCTTCGGGGTCCTATGCAGTTCCTGTTTGAAAGCGAAGTTGATCGTATCTTTACCACGCCACTAG AGTCAACTTTGATGTTTGCTTCTACCGGGAGCCATATTGGCTTTGCAAAGATGGTGCAAGGATACCGGCTCTCAACTTCAGATGGTAATTATATATCAAC AAAAACTGAAGGGAAAAAGTCAATCAAGTTGAAAGTGAATGAGATTGTCCTCCAGGTGCATTGGCAAGAAACTCTTCGAGGCTATGTTGCAGGGATATTA ACCACACACAGGGTGCTTATGGTTTCAGCGGATCTTGATATACTGGCAAGCAGTTCCACAAAATTTGATAAAGGACTTCCTTCATTTAGATCCCTTTTGT GGCTTGGACCTGCTCTTCTTTTTTCTACTGCCACTGCGATTAGTGTGCTTGGTTGGGATGGAATTGTGAGGACAATTCTTTCTGTTAGCTTGCCCTATGC AGTTTTGGTTGGTGCTCTGAACGATAGATTGGTGCTTGCTAACCCAACAGATGTTAATCCCAGACAAAAGAAAGGGGTTGAGATTAAGAGCTGTCTTGTT GGACTCCTTGAACCTCTTCTTATCGGATTTGCCACAATGCAACACACTTTTGAGCAGAAGCTTGACCTGTCAGAAATACTGTACCAAATAACATCAAGGT TTGACAGCTTGCGTATTACACCAAGATCTCTTGATATTCTTGCTAGAGGTCCTCCTGTTTGTGGAGATCTTGCAGTTTCATTATCCCAAGCTGGTCCACA GTTCACTCAGGTGTTGCGGGGTGTTTATGCTATCGAAGCTCTCCGTTTTTCTACTGCTTTAGATGTTTTGAAGGATGAGTTCTTGCGTTCTAGAGATTAT CCAAAATGTCCTCCAACATCACACTTATTCCACCGATTTCGACAGTTGGGATATGCCTGCATCAAGTATGGCCAGTTCGATAGTGCAAAAGAAACTTTTG AAGTCATTGCAGATTACGAAGGCATGCTTGATTTGTTTATATGCCACCTTAACCCCAGTGCCATGCGGCGCCTTGCTCAGAAACTGGAAGAAGAAGGTTT GGATTCACAATTGAGACGGTACTGTGAGAGGATATTAAGAGTTCGCTCTACTGGGTGGACACAAGGCATTTTTGCCAACTTTGCTGCTGAGAGCATGGTT CCCAAAGGTCCTGAATGGGGTGGTGGGAACTGGGAAATTAAAACTCCTACTAATTTGAAGAGTATACCTCAGTGGGAGCTGGCTGGAGAAGTGATGCCAT ACATGAAGACTGATGATGGTACCATCCCGGCCATCATTACAGATCATATTGGTGTTTACCTGGGTTCAATTAAAGGAAGAGGGAATGTTGTTGAAGTAAG GGAAGACAGTTTGGTCAAAGCATTTATCCCTGCTGGTGACAATAAGCCAAATGGGCTTCCAAATGCTTTAGCCAAATCCATATCCAATAAGTCAAATGGG CTGCCTGATGGTCACATGAAGCTTGATTCTTTGTTGGGTCTGGAAACTCTGACCAAGCAAAACGCAGGTACATCTGCTGCTGATGAACAGGCAAAAGCAG AAGAGGAATTCAAGAAAACTATGTATGGAACTGCTAATGATGGTAGCAGCAGTGACGAGGAAGGAGTGTCAAAAACAAAGAAGCTGCAAATTAGAATTCG GGATAAGCCAGTTTCATCTACTACCGTGGATGTCAATAAGATCAAAGAAGCCACAAGACAGTTTAAACTTGGTGATGGTTTAGGCCCACCCATGAGGACA AAGTCATTAACTGGTTCCCAGGACCTTGGTCAAATTTTATCCCAACCTCCTGCAACCACTGCCCCAGTTTCTGCCTCTGCTGATATGTTTGTTACTGATT CATTAATGCAACCTGCGCCAGTATCACAACCAGGTCCTATGGTTATGGGTGGAGGAGTTACAGCTAGACCCATCCCAGAGGACTTCTTCCAGAACACAAT ACCCTCCCTGCAAGTTGCAGCATCTCTGCCACCTCCAGGAACTTACCTTGCAAAATTGGATCAAGTTTCTCAAGGGGTTGGAAGCAACAATGCAGGTGGT ATTCCCAACCCAGGTGCTGCTTCTGTGAGTGATATTGGTCTTCCTGATGGTGGTATTCCACCACAAGCAACTCAACTAGCTGCCCCACTTGCGTCCATTG GACTTGCTGATGGTGGTGTCCCACCTCAAGCTTCCATTCAGGCTGGTATTCCACCTCAGCCACAAGTTCAAGCGCCTCAGGTTCCCCTTTCCACACAACC TCTTGATCTTAGTGTTCTTGGAGTTACAGATTCAGGAAAAACTCCTGCCCCTGCATCTCTGCCATCATCTGTGAGACCTGGACAGGTTCCCCGAGGAGCA GCTGCACCAGTATGTTTCAAGACTGGACTTGCACACCTTGAACAGAATCAACTTCCTGATGCCTTGTCATGTTTTGATGAAGCTTTCCTGGCACTAGCTA AGGATAACTCTCGTGGTGCTGATATTAAAGCTCAAGCAACCATCTGTGCTCAGTACAAGATAGCAGTTACTCTTCTCAAGGAAATAGCACGGCTGCAGAA AGTACAAGGGCCAAGTGCACTCAGTGCAAAAGATGAGATGGCAAGATTGTCACGGCATCTGGGTTCTTTGCCTCTTCTGGCAAAGCACCGAATAAATTGC ATCCGAACTGCCATTAAGCGAAACATGGAAGTGCAGAACTTTGCTTATGGCAAGCAGATGCTTGAGCTCCTCATTTCCAAAGCTCCATCAAGTAAGCAGG ATGAGTTGAGAAGCCTGATTGACATGTGTGTTCAGAGGGGTTCATCCAACAAGTCTATTGATCCTTTGGAAGATCCTTCCCATTTCTGTGCTGCCACACT CAGCCGTCTTTCAACAATCGGATATGATGTTTGCGATCTCTGTGGAGCCAAATTTTCAGCTCTCTCTGCACCTGGATGCATCATCTGTGGAATGGGAAGT ATTAAGAGATCAGATGCCCTCGCAGGGCCTGTTCCTTCACCATTTGGCTGA
AA sequence Show only first row Show all	>Potri.007G041000.1 pacid=42765055 polypeptide=Potri.007G041000.1.p locus=Potri.007G041000 ID=Potri.007G041000.1.v4.1 annot-version=v4.1 MEWTTVQHLDLRHVARGFHRPLQPHAAAFHPTQTLIAAAIGTYIIEFDAVTGSKLSSIDIGASVLRMAYSPNTSHAVIVMVEDGTIRSCDFDTEQSWVLH SPEKKMEPLSFDTEVHMALTPLQPVVFFGFHRRMSVTVVGTVDGGRAPTKIKTDLKKPIVNLACHTRHPVLYVAYADGLIRAYNIHSYAVHYTLQLDNSI KLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTERPSMIGITQVGSQPITSIAWLPALRLLVTVSKDGTLQTWKTRVILNPNRPPMQANFFEPAGIESID IPRILSQQGGEAIYPLPKIKALEAHPKLNLAALLFANMTGVDNVKSRTAYTRDGRKQLFAVLQSARGSSASVLKEKLSSLGSSGILADHQLQAQLQEHHL KGQSQLTISDIARKAFLYSHFMEGHAKSAPISRLPLITILDTKHHLRDIPVCQPIHLELNFFNKENRVLHYPVRAFYLDGLNLMAYNFCSGVDNIYKKLY TSIPGNVEYQAKHMVYSIKQHLFLVVYEFSGSANEVVLYWENTNAQPANNKGSTIKGRDAAFIGPSESQFAILDEDKTGVALYILPGGASKEAGEKNLLL EENHFAETNGASLRGPMQFLFESEVDRIFTTPLESTLMFASTGSHIGFAKMVQGYRLSTSDGNYISTKTEGKKSIKLKVNEIVLQVHWQETLRGYVAGIL TTHRVLMVSADLDILASSSTKFDKGLPSFRSLLWLGPALLFSTATAISVLGWDGIVRTILSVSLPYAVLVGALNDRLVLANPTDVNPRQKKGVEIKSCLV GLLEPLLIGFATMQHTFEQKLDLSEILYQITSRFDSLRITPRSLDILARGPPVCGDLAVSLSQAGPQFTQVLRGVYAIEALRFSTALDVLKDEFLRSRDY PKCPPTSHLFHRFRQLGYACIKYGQFDSAKETFEVIADYEGMLDLFICHLNPSAMRRLAQKLEEEGLDSQLRRYCERILRVRSTGWTQGIFANFAAESMV PKGPEWGGGNWEIKTPTNLKSIPQWELAGEVMPYMKTDDGTIPAIITDHIGVYLGSIKGRGNVVEVREDSLVKAFIPAGDNKPNGLPNALAKSISNKSNG LPDGHMKLDSLLGLETLTKQNAGTSAADEQAKAEEEFKKTMYGTANDGSSSDEEGVSKTKKLQIRIRDKPVSSTTVDVNKIKEATRQFKLGDGLGPPMRT KSLTGSQDLGQILSQPPATTAPVSASADMFVTDSLMQPAPVSQPGPMVMGGGVTARPIPEDFFQNTIPSLQVAASLPPPGTYLAKLDQVSQGVGSNNAGG IPNPGAASVSDIGLPDGGIPPQATQLAAPLASIGLADGGVPPQASIQAGIPPQPQVQAPQVPLSTQPLDLSVLGVTDSGKTPAPASLPSSVRPGQVPRGA AAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLKEIARLQKVQGPSALSAKDEMARLSRHLGSLPLLAKHRINC IRTAIKRNMEVQNFAYGKQMLELLISKAPSSKQDELRSLIDMCVQRGSSNKSIDPLEDPSHFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGS IKRSDALAGPVPSPFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	0	1
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	1.00	0.9630
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	2.00	0.9257
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	3.00	0.9304
AT5G08390			Transducin/WD40 repeat-like su...		Potri.010G255400 [exp]	3.31	0.9032
AT4G24840			unknown protein		Potri.012G096100 [exp]	4.24	0.9154
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	4.47	0.9312
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	7.74	0.8977
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	8.94	0.8893
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	9.89	0.8940
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	12.00	0.9102

Compare expression of checked genes

Potri.007G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.