Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37080 578 / 0 Protein of unknown function, DUF547 (.1.2.3) AT5G42690 388 / 2e-128 Protein of unknown function, DUF547 (.1.2.3) AT2G39690 240 / 5e-73 Protein of unknown function, DUF547 (.1.2) AT3G12540 224 / 9e-66 Protein of unknown function, DUF547 (.1) AT5G60720 189 / 1e-51 Protein of unknown function, DUF547 (.1) AT1G16750 169 / 1e-45 Protein of unknown function, DUF547 (.1) AT3G13000 164 / 1e-43 Protein of unknown function, DUF547 (.1.2) AT5G47380 145 / 9e-37 Protein of unknown function, DUF547 (.1) AT2G23700 146 / 1e-36 Protein of unknown function, DUF547 (.1) AT3G18900 140 / 3e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034800 [exp] 506 / 7e-174 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.005G136401 [exp] 316 / 8e-104 AT4G37080 115 / 6e-29 Protein of unknown function, DUF547 (.1.2.3) Potri.002G128400 [exp] 293 / 2e-92 AT5G42690 316 / 2e-102 Protein of unknown function, DUF547 (.1.2.3) Potri.005G136350 [exp] 248 / 7e-80 AT4G37080 211 / 2e-66 Protein of unknown function, DUF547 (.1.2.3) Potri.010G202900 [exp] 244 / 5e-73 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 221 / 6e-64 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G003900 [exp] 164 / 3e-43 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.001G157200 [exp] 154 / 1e-39 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G033100 [exp] 149 / 4e-38 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021756 [exp] 401 / 1e-131 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10032768 [exp] 397 / 1e-131 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3) Lus10021450 [exp] 222 / 9e-64 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 188 / 3e-55 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 165 / 2e-43 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 157 / 1e-40 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 149 / 4e-38 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 147 / 2e-37 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 147 / 2e-37 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10037293 [exp] 146 / 5e-37 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.007G041100.10 pacid=42765427 polypeptide=Potri.007G041100.10.p locus=Potri.007G041100 ID=Potri.007G041100.10.v4.1 annot-version=v4.1 ATGAACACTAGAGTCCGCACTGCTCTTCAGGCTATGAAAGCTCCTTTAAACCATGATACTAATAAAAAGGAGAAGATGGAGGCTCAAGGGAGGAGCAGAG CAGTTGGTGGCCATAAATCTGCTATGAATTGGCGTAAAGCAAACAAAGAAAGGAAATTGGCCTTGCTACAAGATGTTGATAAGTTGAAAAAGAAACTTAG ACATGAAGAGAATGTTCATAGAGCTTTGGAGAGAGCTTTTACTAGGCCTTTGGGAGCTCTGCCTCGCTTACCTCCTTATCTGCCTCCTTATATCTTAGAG CTACTTGCTGAAGTGGCTGTTCTCGAAGAGGAAGTTGTTCGGCTTGAAGAGCAAGTTGTGAATTTTAGACAAGGACTCTATCAAGAAGCTGTCTACGTCT CCTCCAAGAAGAATGTGGAGAATTCAAAGGATGCAATTGATCAACAACCATCAACTACAAGATCGAAACACGCGAGATCAAAATCACTCTCGCTTAATGA GACCAATTCAGCAACTTTTGCAGCAAGGCCTCAACCTTCTCTTGCTAGGTGCACTTCGAGTAGAAGGCTGTTTTCCACTGACCCCATTATTGAGCGATCA GGGCAGTGTTCTAATAGGCCATCAAATAGAGGAAAATATGCTTCTGGTAAACCCAATTCTTCTTCATCTCTTGTGGATGATGGACGGGGAAAGGAGAATC GATCGTGTATTAATTATGTAAAGGATAAGCAATCTCCAGATAAGATGGCAAAAATCACAACTCCCGTGAAGAGAACTCCAAACAAGCGTGAATCAGAGGA GAAGAGTTTGGAGCCTTCTAAGTTGCAGCTAGAATGCAGGTTAATAGAGCAGGAAAGAGCACAGGAAAGCACTTCTGCTTACATGAATGATAGAATATGC GAAAATAACATCACACCAAACAAGTTAACTGAGGATATTGTGAAGTGCTTGTCCAGCATTTTCTTGAGGATGAGCACGTTGAAGGACAAAGTAGTTGAAT TAGGAACTTTCTCATCACGAGCGACTTTGACATCTCCTGAAGGTGATAGAGGAAATGAAATTCGAGATCCTTATGGCATGTCTGCAGAGTTCAAGATTAG AGATATTGGTTCTTATAAGCATCTTTATGCAATTGAAGCTAGCTCAATTGATCTCAACCGTACGACAAGTGCCTTGTTTTTGCTCCAGAGACTAAGGTTT CTACTAGGGAAGCTTGCCGCTGCAAATTTAGAGGGTCTTACCCATCAGCAGAAGCTTGCTTTCTGGATAAACACTTATAATTCATGCATGATGAATGCAA TTTTGGAGCATGGGATACCCGAGACTCCTGAAATGGTTGTTGCTCTAATGCAAAAGGCAACAATAACTGTTGGCGGACACTTGCTAAATGCAATTACAAT TGAGCATTTCATCTTGAGGCTTCCTTATCACTTAAAATTTACCTGTCCAAAAGCAGTAAAAAATGATGAGATGAAGGCACGCAGCATTTTCGGATTCGAG TGGTCTGAGCCTTTGGTTACTTTTGCACTCTGTTGTGGAAGCTGGTCGTCCCCTGCTGTAAGAGTTTACACAGCCTCTCGAGTTGAAGAAGAGCTAGAAG TAGCAAAGCGAGACTATTTACAAGCGACAGTTGGGATTTCAAGAACGAACAAGTTAATAATTCCAAAGCTGTTGGACTGGTATCTACTAGATTTTGCGAA AGACATGGAATCTTTACTTGATTGGATATGCCTGCAGCTACCGAATGAACTCAGGAATGAAGCAGTCAAATGCCTTGAGAGAAGGGGAAGAGATCCCCTT TCGCAGATAGTACAAGTAATGCCGTATGATTTTAGTTTCAGGTTGCTCTTACATCGGTGA
AA sequence Show only first row Show all	>Potri.007G041100.10 pacid=42765427 polypeptide=Potri.007G041100.10.p locus=Potri.007G041100 ID=Potri.007G041100.10.v4.1 annot-version=v4.1 MNTRVRTALQAMKAPLNHDTNKKEKMEAQGRSRAVGGHKSAMNWRKANKERKLALLQDVDKLKKKLRHEENVHRALERAFTRPLGALPRLPPYLPPYILE LLAEVAVLEEEVVRLEEQVVNFRQGLYQEAVYVSSKKNVENSKDAIDQQPSTTRSKHARSKSLSLNETNSATFAARPQPSLARCTSSRRLFSTDPIIERS GQCSNRPSNRGKYASGKPNSSSSLVDDGRGKENRSCINYVKDKQSPDKMAKITTPVKRTPNKRESEEKSLEPSKLQLECRLIEQERAQESTSAYMNDRIC ENNITPNKLTEDIVKCLSSIFLRMSTLKDKVVELGTFSSRATLTSPEGDRGNEIRDPYGMSAEFKIRDIGSYKHLYAIEASSIDLNRTTSALFLLQRLRF LLGKLAAANLEGLTHQQKLAFWINTYNSCMMNAILEHGIPETPEMVVALMQKATITVGGHLLNAITIEHFILRLPYHLKFTCPKAVKNDEMKARSIFGFE WSEPLVTFALCCGSWSSPAVRVYTASRVEEELEVAKRDYLQATVGISRTNKLIIPKLLDWYLLDFAKDMESLLDWICLQLPNELRNEAVKCLERRGRDPL SQIVQVMPYDFSFRLLLHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37080			Protein of unknown function, D...		Potri.007G041100 [exp]	0	1
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	2.00	0.8272
AT5G35960			Protein kinase family protein ...		Potri.014G136300 [exp]	10.72	0.8356
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.005G044900 [exp]	10.81	0.8222
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.008G172400 [exp]	14.69	0.7642	IAA12.1
AT1G47410			unknown protein		Potri.002G127800 [exp]	15.09	0.7993
AT1G47410			unknown protein		Potri.014G032300 [exp]	15.09	0.7950
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.001G028000 [exp]	16.37	0.8191	Pt-NQR.2
AT2G25280			unknown protein		Potri.018G023700 [exp]	18.49	0.7888
AT3G59490			unknown protein		Potri.017G028900 [exp]	22.27	0.7905
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	28.93	0.7677

Compare expression of checked genes

Potri.007G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.