Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66820 109 / 2e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G136600 [exp] 2036 / 0 AT5G66820 116 / 1e-26 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009344 [exp] 984 / 0 AT5G66820 141 / 5e-35 unknown protein Lus10002968 [exp] 980 / 0 AT5G66820 140 / 8e-35 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF12371 [poplar] [flax] TMEM131_like Transmembrane protein 131-like
Representative CDS sequence Show only first row Show all	>Potri.007G041300.1 pacid=42765952 polypeptide=Potri.007G041300.1.p locus=Potri.007G041300 ID=Potri.007G041300.1.v4.1 annot-version=v4.1 ATGGATGACTTCCATACCTTAACAATCACACCTCGTCAACAACATAAGCACAACCTCTCCATGTTCTGCCTCGGGGGATTGTTTCACCAGGTCAAAGCAT TTCATGTTATTCTGGTTCTGTCATGTACCCTTTTATGCTTTTCTATGTGCGGACCGTGCTTGACGAATGGATTGCAGAAACCAGCAGAATATGATTCATG TGGGTCCTATGGAGATAATGGTGCTGTGGGATTTCAAGATATTAGCGTTGGTGATACTAGTTTGGGCTATGCGGCAGGAAGTTCTATGGCCCTTCTAAAT TTTGAGAATATTTGTACCAATTCTCATTCATTCTGCTTCCTTTCAACATTACCTGGTTTTTCATCAAAAGAGCACAATCTTAAAGTAGCTTCTTTAGAAG TTTCTGGGAGTCCGTCTGATGGTTCATTATTTGTAGGATCAATTCAGGGTAGCAGGTGGGCAGAGAACAAGAGCTGGTCATTGGATTATGGTATGTTCCA GTTATTAAATGGCCAGGCTGTTTCCTGTTCTATGAACTCTAGAGAAGATGTTGATGAGTTATCATCAATGCAAACCAATACTTGTGACCAATGCGATCCT TCTTCATGTAAAGGTCCTTTATTAAATCAGAAGAGAACAAGTGTCAGCCTGAGGAAAAAGTCTGAGATGATGAAATCTAGTTCTTTTGATGCTTCTCCTC CCAATGTAGAAATTAGCCCTCCTGTACTTGACTGGGGGCAGAGGCATTTATATTTTCCCTCAGTAGCATCCTTAACAGTGGCAAATACCTGTAATGACAG CATTTTACATGTCTACGAACCATTTAGCACTGATACACAATTCTATCCCTGCAATTTTAGTGAGGTTTTGTTAGGACCAGGCGAAGTAGCTTCAATTTGT TTTGTGTTTTTGCCCAGGTGGCTGGGTTTGTCCTCAGCTCATCTGATCTTGCAAACGAGCTCTGGTGGATTCCTGGTACAGGTTAAGGGCTATGCAGTTG AGTCGCCATACAATATTAGTCCTTTATCCAGCCTGGATGCTCCTTCTAGTGGACGGTTGAGGAAGAATTTTTCTTTGTTGAACCCTTTTGATGAAATCCT CTACGTGAAGGAAGTAAATGCATGGATATCAGTTTCTCAAGGGAATATTTCGCATAACACTGAAGCAACCTGCAGTTTAGAAAATTTGGGAGGTCCTGAT GGGCTCAGCCACTTGGGTGTTAAGGATTGGTTGGTTGTTAGAAGCGCACAAAATGGTTTTCCATGGATGGCTATGAGGCCCCAAGAAAATTGGGAGATTG GTCCTCATAGCAGTGAAACCATTATGGAGATAGACTTCTCAGTTGAATCTGAAGGAAATGTTTTCGGTGCATTTTGTATGCAGTTGCTAAGGTCCTCTCA AGACAGGACCGACACTGTTATGTTTCCTCTTGAACTTGAACTGGATGGAAAAGTAGCATACAATGGCATTTCTGGTTCAGTTTCTTTTGAAACTCTGGTT CCATATGATGTTGGCAACACTGTTGTTGTTGCTATCGCACTGAGAAATAGAGCTCCTCATGTGTTAAGTGTTGTCAAAATCAGTGAAGTTGCAGCAGCAA AGGTTTTCCAGATCAAGTACATTGAAGGACTGTTGCTTTTCCCCAGCACTGTCACACAAGTTGCTACAGTTACATGTACTCAGCTACTTGTTGAATTACA TGATTCTCCATCTGAAATGTCAAATATGAACAAAGACTGCAAACTAGTTTTACTGACAAATGACTCCAGTACTCAGATTGAAATTCCTTGCCAGGATATA TTCCATGTTTGTTTGAAACGTCAAAAGGATTCATTCATTGGATACGACAATCACTCTGGCGGGGCTGAAACTGGAAATAGAAGGACAGGGTCATTGGGCA GTGGCAAGCAGTCGCTGTCAGAGATTAAGGCATTGGAGATAGCAGAAGCAGATGAATTTGTACTGGGTAATTGGAAATCTCAAGGTACCACAAGTGGCAT GTCCGTGCTTGATGATCATGAGGTGTTGTTCCCAATGGTTCAGGTTGGAACTTATCACCCTAGGTGGATCACTGTAAAGAATCCTAGTGAACATCCAGTT GTAATGCAGCTCATTCTTAACTCAGGAGAAATTATTGATGAGTGTAGGGGCACAGATGGTTCTTTGGAGCCCCCTTCATCGAATATTTTTGTCCATACTG AATTGACTCCTCCTACTAGGTATGGATTCTCAATGGCAGAGAGTGCACTAACAGAAGCTTATGTTCACCCTTATGGTAAAGCATATTTTGGGCCAATATT CTTTTACCCTTCAAATCGCTGTGGGTGGAGAAGTTCAGCCCTGATAAGAAATAATCTCTCTGGTGTGGAGTGGTTATCTTTGAGAGGATTTGGAGGGTCA CTTTCCCTAGTCCTGCTTGATGGTTCAGAGCCTGTTCAGAGCATAGAATTTAATCTGAACTTGCCAATGCCCCTAAATATCTCTCGTATGGATGGGCTGT TTAACATGGAAGAGACTACTTATATTTGTTCTGTGCCCTCGTCTAAAGAGCTGTATGCCAAGAACATGGGAGACTTGCCACTTGAGGTGAAAAGTATTGA AGTTTCTGGGTCTGAGTGTGGGTTGGATGGATTTATGGTTCATGCTTGTAAAGGATTTTCTCTTGAACCTGGGGAGTCAACAAAGCTTCTGATCTCATAC CAGTCCGATTTTTCCGCAGCTATGGTGCACAGAGATCTTGAACTGGCCTTGGCTAGTGGAATTCTTGTGATACCCATAAAGGCAAGTCTTCCTTTGTACA TGTACAATCTCTGTAAAAAATCAGTATTCTGGATGCGGTTGAAGAAATTCTCTGCAGCAGTCCTCCTCGCCGCTTCCTTAATGATTCTGATATTCTGTTG CATATTTCCCCAAGTGATTGCTTTTGGCTCCCAGGATTACTATTTTAACAGCAAGGAAAGCTCCTCTACTACTGTAGGAAGTGCAGGAAAAGCTTCTCAT ATGCATCGTAACCAGAGAAAGATTAAGTTCTCTGAGTCTAGGGGAATGGACAGTTTGTTATCGTCTGTGCATCGTAACCAGAGAAAGAGTAAGTTCTCTG AGTCTAGAGGAATGGACAGTTTGTTATCGTCTGTCGGGGAAGACAAGGCCTCTAATCAGGAATCTATTGGTAAATATGCTGATGGTCATGATGGAGCCTT AGAACAGGGGCTAACCATTAAGAATTTGGCATCAACTCTAGAAAATCACAAACAAGGTTACATTTTGTCATGTACTGAAGAGGACAAATCTGTAGCGGTT GAGAATTCTGATTCACTCAATGCTCCCCAACCTCCCAACCTTACAGTCAGGACCGGAAAAGATAAAGGAAGAAGGCGAAGAAAGAGGAAGGGTGTTAGTG CATGTTTAACAGGACTGCTTGAAGTTTCGAGTAGTCAAAGTGGAAATTCTACACCTTCATCTCCTTTGTCGCCTGTATCTGCAACACCCAATCGACTGTG GTCGCCATCTTCTGACGTGGAAAGTGTTGGGGTTAGAAATCCATTCACTCTAGCGGCATGCCAACAGTTTGAGAGGTTTCAAGTTTCGAAATCTTCTTCC AAGACGGTTGTCGTGGAGCCCAAGGGTTCAATTAAATACCACAGTTACAACTACTTTTCGGCTACTCAAGAGCGACCTTCAGTGCCCAACAAGACCTTTA ATACACCTTCTGCTGCCTTTCCTTGTTCTGGTGGTGCTGCCCCCACTCTGCATTACTCTTCTCCCTTGTCATCAACATCAACAATTGCACCTATTGTGCG AGCTCCTGGGGCAAAACTTTTAAACCAAAGAAGTGTTGAAGTAGATGAAAAGGTGGGGGATGAATATACATATGATATCTGGGGTGACCATTTTTCTGGT CTCCATTTAGCGGGTAGTCCAAAGGATACAACAATGAAAACAATAGGAACAGAAGGCAATTCCGATACCTTCTTTGTAAGGGGTCCACAAACCCTCATGG AAAAATCTCAACCAAAATCTGTGAGTTCCTTTCACCAAGAGGGTTAA
AA sequence Show only first row Show all	>Potri.007G041300.1 pacid=42765952 polypeptide=Potri.007G041300.1.p locus=Potri.007G041300 ID=Potri.007G041300.1.v4.1 annot-version=v4.1 MDDFHTLTITPRQQHKHNLSMFCLGGLFHQVKAFHVILVLSCTLLCFSMCGPCLTNGLQKPAEYDSCGSYGDNGAVGFQDISVGDTSLGYAAGSSMALLN FENICTNSHSFCFLSTLPGFSSKEHNLKVASLEVSGSPSDGSLFVGSIQGSRWAENKSWSLDYGMFQLLNGQAVSCSMNSREDVDELSSMQTNTCDQCDP SSCKGPLLNQKRTSVSLRKKSEMMKSSSFDASPPNVEISPPVLDWGQRHLYFPSVASLTVANTCNDSILHVYEPFSTDTQFYPCNFSEVLLGPGEVASIC FVFLPRWLGLSSAHLILQTSSGGFLVQVKGYAVESPYNISPLSSLDAPSSGRLRKNFSLLNPFDEILYVKEVNAWISVSQGNISHNTEATCSLENLGGPD GLSHLGVKDWLVVRSAQNGFPWMAMRPQENWEIGPHSSETIMEIDFSVESEGNVFGAFCMQLLRSSQDRTDTVMFPLELELDGKVAYNGISGSVSFETLV PYDVGNTVVVAIALRNRAPHVLSVVKISEVAAAKVFQIKYIEGLLLFPSTVTQVATVTCTQLLVELHDSPSEMSNMNKDCKLVLLTNDSSTQIEIPCQDI FHVCLKRQKDSFIGYDNHSGGAETGNRRTGSLGSGKQSLSEIKALEIAEADEFVLGNWKSQGTTSGMSVLDDHEVLFPMVQVGTYHPRWITVKNPSEHPV VMQLILNSGEIIDECRGTDGSLEPPSSNIFVHTELTPPTRYGFSMAESALTEAYVHPYGKAYFGPIFFYPSNRCGWRSSALIRNNLSGVEWLSLRGFGGS LSLVLLDGSEPVQSIEFNLNLPMPLNISRMDGLFNMEETTYICSVPSSKELYAKNMGDLPLEVKSIEVSGSECGLDGFMVHACKGFSLEPGESTKLLISY QSDFSAAMVHRDLELALASGILVIPIKASLPLYMYNLCKKSVFWMRLKKFSAAVLLAASLMILIFCCIFPQVIAFGSQDYYFNSKESSSTTVGSAGKASH MHRNQRKIKFSESRGMDSLLSSVHRNQRKSKFSESRGMDSLLSSVGEDKASNQESIGKYADGHDGALEQGLTIKNLASTLENHKQGYILSCTEEDKSVAV ENSDSLNAPQPPNLTVRTGKDKGRRRRKRKGVSACLTGLLEVSSSQSGNSTPSSPLSPVSATPNRLWSPSSDVESVGVRNPFTLAACQQFERFQVSKSSS KTVVVEPKGSIKYHSYNYFSATQERPSVPNKTFNTPSAAFPCSGGAAPTLHYSSPLSSTSTIAPIVRAPGAKLLNQRSVEVDEKVGDEYTYDIWGDHFSG LHLAGSPKDTTMKTIGTEGNSDTFFVRGPQTLMEKSQPKSVSSFHQEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66820			unknown protein		Potri.007G041300 [exp]	0	1
AT4G15820			unknown protein		Potri.008G222000 [exp]	3.16	0.8813
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	3.46	0.8615
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	11.35	0.8564
AT5G41670			6-phosphogluconate dehydrogena...		Potri.001G095800 [exp]	14.00	0.7334
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.004G091000 [exp]	15.58	0.8133
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150300 [exp]	16.49	0.7498
AT2G43250			unknown protein		Potri.007G124700 [exp]	18.00	0.8499
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	22.71	0.8361
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	23.55	0.8225
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	26.22	0.8465

Compare expression of checked genes

Potri.007G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.