Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23440 45 / 1e-07 unknown protein AT5G66816 45 / 3e-07 unknown protein AT5G66815 40 / 2e-05 unknown protein AT3G50610 40 / 3e-05 unknown protein AT1G47485 39 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G041500 [exp] 55 / 4e-11 AT2G23440 54 / 3e-11 unknown protein Potri.007G042000 [exp] 53 / 2e-10 AT5G66816 43 / 2e-06 unknown protein Potri.005G136800 [exp] 51 / 9e-10 AT5G66816 45 / 4e-07 unknown protein Potri.014G034500 [exp] 46 / 9e-08 AT5G66815 43 / 1e-06 unknown protein Potri.005G136700 [exp] 45 / 1e-06 AT3G50610 78 / 1e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002969 [exp] 62 / 4e-14 AT2G23440 44 / 7e-07 unknown protein Lus10009345 [exp] 55 / 2e-11 AT2G23440 42 / 1e-06 unknown protein Lus10009346 [exp] 48 / 1e-07 AT3G50610 108 / 5e-28 unknown protein Lus10002970 [exp] 44 / 2e-06 AT3G50610 98 / 2e-24 unknown protein Lus10009347 [exp] 41 / 9e-06 AT2G23440 50 / 2e-09 unknown protein Lus10033285 [exp] 37 / 0.0005 AT2G35612 42 / 1e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G041400.1 pacid=42765956 polypeptide=Potri.007G041400.1.p locus=Potri.007G041400 ID=Potri.007G041400.1.v4.1 annot-version=v4.1 ATGGCCACCACTAGAGTGATTACGGGTGCTTGTATTGTTCTTTTTTTCTTGATTTTGTGTCATGAAGTTGTTCATGTGGAGGGAAGGCCTTTAAAGTCTG TTGAGTTGTGCAAGAAATGCTCAACAAATAATGATAACTCTCAGAATGTGCCAGAAAATGGTAATCACGGCCTGGCAGCTGGTCAAGAGCAAACAAGTAA GGTCAAGTATGTTGATGATTTTCGACCCACAGAACCAGGTCACAGTCCGGGAGTTGGTCACTCCGTCAACAATTGA
AA sequence Show only first row Show all	>Potri.007G041400.1 pacid=42765956 polypeptide=Potri.007G041400.1.p locus=Potri.007G041400 ID=Potri.007G041400.1.v4.1 annot-version=v4.1 MATTRVITGACIVLFFLILCHEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGLAAGQEQTSKVKYVDDFRPTEPGHSPGVGHSVNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23440			unknown protein		Potri.007G041400 [exp]	0	1
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	1.73	0.9122
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	2.44	0.9033
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.010G173300 [exp]	3.87	0.8845	ZIP1.1
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.006G230700 [exp]	4.24	0.8950
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	8.36	0.8699
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.019G079200 [exp]	8.48	0.8514
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.015G141200 [exp]	8.83	0.8514	Pt-EMS1.1
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	9.79	0.8329
AT4G24790			AAA-type ATPase family protein...		Potri.015G088100 [exp]	12.00	0.8192
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	13.56	0.8651

Compare expression of checked genes

Potri.007G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.