Plant FIBer expression Database

Potri.007G041601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50610 74 / 8e-15 unknown protein
AT5G66816 57 / 8e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G136700
[exp]
267 / 4e-85 AT3G50610 78 / 1e-16 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002970
[exp]
93 / 6e-21 AT3G50610 98 / 2e-24 unknown protein
Lus10009346
[exp]
94 / 7e-21 AT3G50610 108 / 5e-28 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G041601.1 pacid=42766161 polypeptide=Potri.007G041601.1.p locus=Potri.007G041601 ID=Potri.007G041601.1.v4.1 annot-version=v4.1
ATGGCCGAAACATGTAAATGCGCTTTCCTTATTCTTGCATTTGTTACCTGCTTCCAAATCCTGTTTATTGAAGGAAGGTCAATTAAGCAAACGAATAAGC
AGGAACATGTTACCAATGAAATAGAGCCGCTAAAAGAAATGGCCAACCAAAGTACGAATACCAACTTGCACCACAACACTGCAAATAATCAAAAAGTTTC
TCTCCCTTCACCCCCAGTTCACATTCCGACTGTTCACCATTCCAAGGCAGGCAGAAAAGAAATGACCCCTCCTATGGTCCCAAGCTTCAGCGGTTCTCCT
GGTGTTAGGCATCCAAAGACACCGGGGGCTAACTCTGTCACTACTGTGAAAGATGATTTCAAACCCATAACATCTGGTCAGAGTCCTGGTGTTGGCCACA
ACAATGACAATTCTGTCACTGCTTTCAAAGATGATTTCCAACCCACAACACCAGGTAACAGTCCTGGAGTTGGCCATATTCTTGTAGATGAAGATGACAG
TGAAGATGATGATCCAAAGGCACCTGGTACTAGCTCCAGTAATGAACGTTCTGGTGCAGCATTCAAACCCACAACACCAGGTCACAGCCCTGGCGTTGGC
CATATGTCATCAGTAGATCAAAGTGATAAGACTGATCTAAAGGCATCCAAAACTGAACTTTCTGTCACAACACCAGGTCATAGTCCCGGGGTTGACCATA
CTCTTTCAGATGAAGATGAAGATGCTAGTGAAGATGTTGATCCAAAGGCACCCGGTACTGGCTCCAGTATAAAACGTTCTGGTGCAGCATTCAAACCCAC
AACACCAGGTCACAGCCCTGGCATTGGCCATATGTCATCAGTAGATCAAAGTGATAAGACCGATTCAAAGGCATCCGAAATTGAACATTCTGTCAAAACA
CCAGGTCATAGTTCCAGGGTTGGCCATATTCTTTCAGATGAAGATGCAGATGATAGTGAAGATGTTGATCCAAAGGCACCCGGTACTGGCTCCAGTATAA
AACGTTCTGGTGCAGCATTCAAACCCACAACACCAGGTCATAGCCCTGGCATTGGCCATATGTCATCAGTAGATCAAAGTGATAAGATCGATTCAAAGGC
ATCCGAAATTGAACATTCTGTCACAACACCAGGTCATAGTTCCAGGGTTGGCCATATTCTTTCAGATGAAGATGCAGATGATAGTGAAGATGTTGATCCA
AAGGCACCCGGTACTGGCTCCAGTATAAAACGTTCAAGTGCAGCATTCAAACCCACAACACCAGGTCACAGCCCTGGCATTGGCCATATGTCATCAGTAG
ATCAAAGTGATAAGATCGATTCAAAGGCATCCGAAATTGAACATTTTAACACTGAACATTCTGTCACAACACCAGGTCATAGTCCCGCGGTTGGCCATAT
TCTTTCAGATGAAGATGAAGATGATAATGAAGATGTTGATCCAAAGGCACCCGGTACTGGCTCCAGTATAAAACGTTCTGGTGCAGCATTTAAACCCACA
ACACCAGGTCACAGCCCTGGCATTGGCCATATGTCATCAGTAGATCAAAGTGATAAGACCGATCGAAAGGCAACCAACATTGAACATTCTGTCGCTAGAG
TGCCAGATGGTTTCCGACCCGCGGTACCAATTCAGGGCCCTGGGGTTGGTCATGTTTTCCAAGCACAAACGAAGAACTAA
AA sequence
>Potri.007G041601.1 pacid=42766161 polypeptide=Potri.007G041601.1.p locus=Potri.007G041601 ID=Potri.007G041601.1.v4.1 annot-version=v4.1
MAETCKCAFLILAFVTCFQILFIEGRSIKQTNKQEHVTNEIEPLKEMANQSTNTNLHHNTANNQKVSLPSPPVHIPTVHHSKAGRKEMTPPMVPSFSGSP
GVRHPKTPGANSVTTVKDDFKPITSGQSPGVGHNNDNSVTAFKDDFQPTTPGNSPGVGHILVDEDDSEDDDPKAPGTSSSNERSGAAFKPTTPGHSPGVG
HMSSVDQSDKTDLKASKTELSVTTPGHSPGVDHTLSDEDEDASEDVDPKAPGTGSSIKRSGAAFKPTTPGHSPGIGHMSSVDQSDKTDSKASEIEHSVKT
PGHSSRVGHILSDEDADDSEDVDPKAPGTGSSIKRSGAAFKPTTPGHSPGIGHMSSVDQSDKIDSKASEIEHSVTTPGHSSRVGHILSDEDADDSEDVDP
KAPGTGSSIKRSSAAFKPTTPGHSPGIGHMSSVDQSDKIDSKASEIEHFNTEHSVTTPGHSPAVGHILSDEDEDDNEDVDPKAPGTGSSIKRSGAAFKPT
TPGHSPGIGHMSSVDQSDKTDRKATNIEHSVARVPDGFRPAVPIQGPGVGHVFQAQTKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50610 unknown protein Potri.007G041601
[exp]
0 1
AT3G44540 FAR4 fatty acid reductase 4 (.1.2) Potri.009G145100
[exp]
11.04 0.6995
AT4G37280 MRG family protein (.1) Potri.002G122500
[exp]
20.59 0.6096
AT4G10490 2-oxoglutarate (2OG) and Fe(II... Potri.014G106700
[exp]
23.02 0.6096
Potri.006G076350
[exp]
27.23 0.6096
Potri.006G189401
[exp]
30.85 0.5819
AT1G47670 Transmembrane amino acid trans... Potri.004G181000
[exp]
34.64 0.5953
Potri.010G120401
[exp]
37.78 0.5876
AT1G48100 Pectin lyase-like superfamily ... Potri.010G152000
[exp]
46.24 0.5515
AT5G12440 C3HZnF CCCH-type zinc fingerfamily pr... Potri.001G276300
[exp]
58.24 0.5727
AT5G66460 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl ... Potri.007G022000
[exp]
80.79 0.5310

Potri.007G041601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.