Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66816 43 / 2e-06 unknown protein AT5G66815 43 / 2e-06 unknown protein AT2G23440 42 / 3e-06 unknown protein AT3G50610 41 / 5e-05 unknown protein AT1G47485 37 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G136800 [exp] 121 / 4e-37 AT5G66816 45 / 4e-07 unknown protein Potri.007G041400 [exp] 47 / 7e-08 AT2G23440 45 / 2e-07 unknown protein Potri.007G041500 [exp] 45 / 2e-07 AT2G23440 54 / 3e-11 unknown protein Potri.005G136700 [exp] 45 / 2e-06 AT3G50610 78 / 1e-16 unknown protein Potri.014G034500 [exp] 38 / 0.0001 AT5G66815 43 / 1e-06 unknown protein Potri.004G234800 [exp] 36 / 0.001 AT2G35612 64 / 6e-15 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009345 [exp] 47 / 4e-08 AT2G23440 42 / 1e-06 unknown protein Lus10002969 [exp] 47 / 5e-08 AT2G23440 44 / 7e-07 unknown protein Lus10009347 [exp] 41 / 1e-05 AT2G23440 50 / 2e-09 unknown protein Lus10002970 [exp] 40 / 0.0001 AT3G50610 98 / 2e-24 unknown protein Lus10009346 [exp] 40 / 0.0001 AT3G50610 108 / 5e-28 unknown protein Lus10033285 [exp] 37 / 0.0009 AT2G35612 42 / 1e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G042000.1 pacid=42765645 polypeptide=Potri.007G042000.1.p locus=Potri.007G042000 ID=Potri.007G042000.1.v4.1 annot-version=v4.1 ATGGCCCAATCAAATTTGCTCTCTGCCTTTGTTTTCCTTGTACTGATTTTCTCCCATGAACTTCAGTTCATTGAGGGAAGGTATTTGAATCTCAAAACCC CTAACAAGTTCCTTCAGAAGGAAATAAGAAGACTTGTTGAGAGCAATAGCAAGTTACATGTTAATGATAACCTCGATAAACCAGTCAATGCTACCAAAGT GGCTCCACCGGCACCTCCAGCTCCGGTTGTTGGCGAGCCCCATCCATCCCTACCAGGCCATGTAGATGACTTCAGACCTACTGCCCCAGGCCACAGCCCT GGTGTTGGGCATTCCTTACAAAACTAG
AA sequence Show only first row Show all	>Potri.007G042000.1 pacid=42765645 polypeptide=Potri.007G042000.1.p locus=Potri.007G042000 ID=Potri.007G042000.1.v4.1 annot-version=v4.1 MAQSNLLSAFVFLVLIFSHELQFIEGRYLNLKTPNKFLQKEIRRLVESNSKLHVNDNLDKPVNATKVAPPAPPAPVVGEPHPSLPGHVDDFRPTAPGHSP GVGHSLQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66816			unknown protein		Potri.007G042000 [exp]	0	1
AT3G50610			unknown protein		Potri.005G136700 [exp]	3.87	0.8685
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	11.91	0.8749
AT1G08440			Aluminium activated malate tra...		Potri.001G217300 [exp]	15.42	0.8497
					Potri.002G177700 [exp]	16.97	0.8562
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078300 [exp]	18.00	0.8617
AT5G23170			Protein kinase superfamily pro...		Potri.003G010300 [exp]	18.57	0.7720
					Potri.003G010664 [exp]	20.97	0.8455
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G064100 [exp]	22.09	0.8472
AT2G37530			unknown protein		Potri.006G083800 [exp]	24.49	0.8410
					Potri.005G189000 [exp]	25.25	0.8410

Compare expression of checked genes

Potri.007G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.