Plant FIBer expression Database

Potri.007G042100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50620 509 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT2G15730 472 / 2e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT4G34420 462 / 3e-164 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G136900
[exp]
647 / 0 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.009G105200
[exp]
485 / 2e-173 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.004G143300
[exp]
474 / 4e-169 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.014G034300
[exp]
469 / 5e-167 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009348
[exp]
509 / 0 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10002971
[exp]
506 / 0 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10012072
[exp]
437 / 1e-154 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10027910
[exp]
437 / 2e-154 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10021749
[exp]
400 / 3e-140 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10042667
[exp]
399 / 1e-139 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00685 Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence
>Potri.007G042100.2 pacid=42765156 polypeptide=Potri.007G042100.2.p locus=Potri.007G042100 ID=Potri.007G042100.2.v4.1 annot-version=v4.1
ATGGCTGAGTATATTTGTGTATTAAACAAGGATACGATAATCATAAAGCCTGCTAAGAAAACTCCCATTTTGTTAAGGATGATAGTTTTAGTGTTTGCAA
TGGTCTGCGGTGTTTATATCTGCTCAGTTTGTTTAAAGCAGATAAGTACCCATAGTAAAATTAAAATTCAAGATATCCAAGTCATTGAGAGGCCGTCTCC
TGATGTTGACCATGAAAATTTGCAAATTTCTAGTGTACATTATCCAAATCCTGAAACTTTTAGCAGGGCTGAATGCGCTCATAATCCTGTGCGGTACTTT
GCTATATTATCAATGCAAAGATCTGGGAGTGGATGGTTTGAAACATTGTTAAACAGTCATGTTAATGTAAGCTCAAACGGGGAGATATTTTCTGTTTTGG
ATAGGAGGATAAATATTTCATCAATTACACAGACTCTAGATAAAGTCTACAATTTGGACTGGTTCACAAGTGCTTCCAAGAATGAATGCTCCGCGGCAGT
TGGCTTCAAGTGGATGCTTAATCAGGGAGTAATGCAGCATCACAAGGAAATAGCAGACTACTTCAACCGCAGGGGTGTATCTGCAATATTTCTGTTTCGA
AGAAATCTACTACGTCGCATGGTTTCAGTTCTTGCGAATTCCTATGACCGTCATGCTAAGCTATTGAATGGGACCCACAAGTCTCATGTTCATTCCACAG
AAGAGGCCGAAACACTTGCAAAATACAAGCCTATGATCAATTCCACACTGTTGATTTCTGATCTGAAGGAGGTTGAGATAACAGCTACCAAGGCTTTAGA
ATACTTCAACAGCACCAGGCATATTGTTCTGTACTATGAGGATCTCATCAAAAACCCCACAAAACTAAAAGATGTTCAAGCATTTCTAGGCCTTCCAGTG
ATGGAGCTAATGAGCCGTCAGGTCAAGATACACAAAGGTCCATTGTCAGACCATGTTAAGAACTGGGAAGATATCAACAAGACACTGAATGGAACTGCAT
ACGAGAGTTTCCTCCAAGCTGACTATTAA
AA sequence
>Potri.007G042100.2 pacid=42765156 polypeptide=Potri.007G042100.2.p locus=Potri.007G042100 ID=Potri.007G042100.2.v4.1 annot-version=v4.1
MAEYICVLNKDTIIIKPAKKTPILLRMIVLVFAMVCGVYICSVCLKQISTHSKIKIQDIQVIERPSPDVDHENLQISSVHYPNPETFSRAECAHNPVRYF
AILSMQRSGSGWFETLLNSHVNVSSNGEIFSVLDRRINISSITQTLDKVYNLDWFTSASKNECSAAVGFKWMLNQGVMQHHKEIADYFNRRGVSAIFLFR
RNLLRRMVSVLANSYDRHAKLLNGTHKSHVHSTEEAETLAKYKPMINSTLLISDLKEVEITATKALEYFNSTRHIVLYYEDLIKNPTKLKDVQAFLGLPV
MELMSRQVKIHKGPLSDHVKNWEDINKTLNGTAYESFLQADY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50620 P-loop containing nucleoside t... Potri.007G042100
[exp]
0 1
AT3G02630 Plant stearoyl-acyl-carrier-pr... Potri.010G179400
[exp]
3.74 0.7206
AT2G40620 bZIP AtbZIP18 Basic-leucine zipper (bZIP) tr... Potri.013G091400
[exp]
10.09 0.7145
AT5G08415 Radical SAM superfamily protei... Potri.013G136000
[exp]
14.00 0.6230
AT1G01730 unknown protein Potri.002G158500
[exp]
16.73 0.6154
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.001G380900
[exp]
19.36 0.6215
AT2G41900 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type ... Potri.009G061000
[exp]
23.36 0.6377
AT5G64880 unknown protein Potri.007G081700
[exp]
23.64 0.6236
AT3G11150 2-oxoglutarate (2OG) and Fe(II... Potri.008G069800
[exp]
27.98 0.6332
AT2G46225 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) Potri.002G165900
[exp]
30.39 0.6395
AT3G46550 FLA4, SOS5 salt overly sensitive 5, fasci... Potri.006G174900
[exp]
40.39 0.5548

Potri.007G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.