Plant FIBer expression Database

Potri.007G042300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G137500
[exp]
160 / 2e-49 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2)
Potri.004G142100
[exp]
41 / 0.0002 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1)
Potri.009G103600
[exp]
41 / 0.0003 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02234 CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence
>Potri.007G042300.1 pacid=42765470 polypeptide=Potri.007G042300.1.p locus=Potri.007G042300 ID=Potri.007G042300.1.v4.1 annot-version=v4.1
ATGGTGAAAGTCGCCGCCGCCGCCGCCGCCGCCGCTCAAGTTGGGGTGAAAACCAGAACTCGAGCTACAAAGAAAAGATCAAGACATATCAAGATCTCTA
TTAAAGTTAGAAGTAATGTTACTAGCAGTCGTCAAGAACGCGTAATAATTAGGTCTGACAATTCAGCTTCATATCCACTGGATGTTAATTCCGGTCACCG
GATGGTGACTGAAGAGAGATGTTCAAGCCCTAGCTTAGATGATGATTTTGAAGATAATCATTCATTAATGTCGTCTACTTCTTGTTGTTCTAGCAATGGA
TCATGTGATGAGATAATTAAGTTCACAGATCTGGAGGAAGAGAGAGTTGAAGTAGAAACGTCAATGTATTATAGTAGTAGTCGTAGGGAAAGAGAGAAAA
CACCGACTTCAAACGCTCTCCGGGAAGAATCAACATCAGAAAACATGGATTCAACGGCAACCCCAGCGCCATTGAAGAAGCCTAATTCCCATCGAAGATC
AACGGCCGCGGCGGTGATAAGGATAACAGATGAAGAGGTTGAGAAATTCTTCTGCGAAATTGAGAAAACTGTTCCACAACGCTTCAAAGACAAGTATAAC
TTTGATTTTGACAAAGATGAGGCGTTGGAAGGACGCTATGAGTGGGTTAGATTAAACCCATGA
AA sequence
>Potri.007G042300.1 pacid=42765470 polypeptide=Potri.007G042300.1.p locus=Potri.007G042300 ID=Potri.007G042300.1.v4.1 annot-version=v4.1
MVKVAAAAAAAAQVGVKTRTRATKKRSRHIKISIKVRSNVTSSRQERVIIRSDNSASYPLDVNSGHRMVTEERCSSPSLDDDFEDNHSLMSSTSCCSSNG
SCDEIIKFTDLEEERVEVETSMYYSSSRREREKTPTSNALREESTSENMDSTATPAPLKKPNSHRRSTAAAVIRITDEEVEKFFCEIEKTVPQRFKDKYN
FDFDKDEALEGRYEWVRLNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G23430 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-... Potri.007G042300
[exp]
0 1
AT1G69510 cAMP-regulated phosphoprotein ... Potri.010G167000
[exp]
6.24 0.8281
AT1G19715 Mannose-binding lectin superfa... Potri.002G030400
[exp]
8.12 0.8010
AT1G76040 CPK29 calcium-dependent protein kina... Potri.005G245000
[exp]
12.12 0.7959
AT3G60720 PDLP8 plasmodesmata-located protein ... Potri.002G145400
[exp]
13.11 0.7910
AT2G25920 unknown protein Potri.002G198400
[exp]
14.69 0.7518
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Potri.003G035200
[exp]
15.58 0.7817
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Potri.014G081200
[exp]
15.96 0.7686
AT5G54660 HSP20-like chaperones superfam... Potri.011G131800
[exp]
17.60 0.7873
AT1G24440 RING/U-box superfamily protein... Potri.010G052700
[exp]
17.97 0.7622
AT2G03500 GARP Homeodomain-like superfamily p... Potri.018G074200
[exp]
22.71 0.7862

Potri.007G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.