Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37030 708 / 0 unknown protein AT4G12680 414 / 2e-138 unknown protein AT3G27390 390 / 3e-129 unknown protein AT5G40640 388 / 2e-128 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338900 [exp] 396 / 2e-131 AT5G40640 718 / 0.0 unknown protein Potri.007G035400 [exp] 378 / 7e-125 AT4G12680 411 / 9e-138 unknown protein Potri.014G170800 [exp] 348 / 6e-113 AT4G12680 685 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011021 [exp] 703 / 0 AT4G37030 698 / 0.0 unknown protein Lus10001003 [exp] 700 / 0 AT4G37030 707 / 0.0 unknown protein Lus10016056 [exp] 405 / 6e-135 AT4G12680 749 / 0.0 unknown protein Lus10032110 [exp] 389 / 1e-128 AT3G27390 728 / 0.0 unknown protein Lus10025177 [exp] 386 / 3e-127 AT4G12680 738 / 0.0 unknown protein Lus10014575 [exp] 379 / 2e-123 AT5G40640 714 / 0.0 unknown protein Lus10022317 [exp] 374 / 4e-123 AT3G27390 722 / 0.0 unknown protein Lus10014881 [exp] 199 / 2e-58 AT3G27390 380 / 3e-128 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G042400.1 pacid=42766187 polypeptide=Potri.007G042400.1.p locus=Potri.007G042400 ID=Potri.007G042400.1.v4.1 annot-version=v4.1 ATGGGAAAGTCAAACAATCTCCATGGTTGGTTAAGGTTTCTCTATGTGATTTTTGCCTTCTGCTCAGCTTTCTTCCTGGGAGCTCTTAAAGGGCTGTTGG TGGGGCCTATTGCTGCTTCTGTACTAATATTAGGGAATGGTGCAGTAATTCTGGGAATGTTACCTCCACATATTTCCTGGACATTCTACACCCTTGTGAA GACAGATAGGTTTGATATACCTCTTAAAGTGGCCCTCTTGGTTGCTTTGCCTGCTTTATTTGGTATATGGCTGGGTTTAAGCATAGCTGGGACAGTTCTT GTGGGACTGGGGTATGGGTTCTTTGCTCCCTGGATTGCGAGTTTTGAGGCCTTTAGGCATGATGATGATGATGATGATGATGAGTTCAAGACATTATACC ACTGTGTTGTGGATGGAACTTGGGGAATTATTAAAGGCAGCTGTACTGTAGTTACAGATTTTGCAGATATTTGCTGCCATTCTTACCCCCTCTATTTGAA GGAGTTGCGAGAATCCTCTGCTTCAAATGAAATTCGAACTCTTAGGTTAATTCATGTGCCTGGATGTATCATTGCTGGGCTGGTGGGGCTAATAGTGGAT GTTCCTCTCTTTGCTGCAATTGCTATAATTAAGAGTCCATACATGCTGTTCAAGGGCTGGTATCGACTGCTACATGACCTAATTGGCCGAGAGGGCCCGT TTCTCGAAACAGCTTGCATTCCTATTGCTGGCTTGACAATCCTTTTGTGGCCACTAGTTGTTGTTGGGAGCGTCTTGGTGACCATTTTCTCAAGCATTTT CATTGGATTGTATGCATCAGTTATATTATATCAGGAAAGATCTTTCTGGCGAGCTGTGGCTTATGTGATTGCAATGGTTGCGGAATTTGACGAGTATACA AATGACAGACTTTATCTCAGAGAGGGAACTTTCCTTCCAAAGCCCAAATATCAAAAGAAAGGGACCTCTCACTCATCTGAGCTTTCTGTCGGAGGAAGCC TTGCCAAATTTAGTTCTGTTCATGTAGAGGCTCCTGCGATGCTTGTGCCAAGCTTTGCACATTCAAAATCAGTTAGGGAGACAGTACAAGAAGTGAAAAT GGTTCAGGTATGGGGAGTAATGATGAGATCATGCGAAATGAGGGGCAGGGATCTTTTGGATTCTGGTGCCATAACACTGGCTGACCTCAGTAACTATTTG AAGGCCAGGGGTGGCAATGAAGCATCCGTTATATGTGTTGGCTTGCCTTGTTATTCATTTTTGCAATCCCTCCTGAATTCCATTAAAGCTGGTTCAGATG GTTTTCTGCTTTCCGATGGTACTGAAATAACACATCATAATAGACCAAATGACAAATTGTTCGACTGGTTCTTTCAGCCGCTGATGGTCCTAAAAGAGCA AATAAGGGTCATTAAATTGGAAGAAGGTGAAGAAAGGTTCTTGCAGAGAGTAGTTCTTTATGGAAATGATACACAACGCATGGAGACTTGGGATAATGGC AGTTTGGTGCCTCAAGAGGCTCTGCGAGCTGCTCAAATACAGGGCATCACCAGAAGGATGATAGGAATGATTAGAGGTATATCGAAATTTCCCACTTACA GACGGAGATTTCGCCAGGTTGTGAAGGCTTTGATAGCATATTATGCGGAGAAGGAGGGTGTTACGAGATCCAGTTCCATGCGATCAGTAGCAAGCATTGA AAATGTATAG
AA sequence Show only first row Show all	>Potri.007G042400.1 pacid=42766187 polypeptide=Potri.007G042400.1.p locus=Potri.007G042400 ID=Potri.007G042400.1.v4.1 annot-version=v4.1 MGKSNNLHGWLRFLYVIFAFCSAFFLGALKGLLVGPIAASVLILGNGAVILGMLPPHISWTFYTLVKTDRFDIPLKVALLVALPALFGIWLGLSIAGTVL VGLGYGFFAPWIASFEAFRHDDDDDDDEFKTLYHCVVDGTWGIIKGSCTVVTDFADICCHSYPLYLKELRESSASNEIRTLRLIHVPGCIIAGLVGLIVD VPLFAAIAIIKSPYMLFKGWYRLLHDLIGREGPFLETACIPIAGLTILLWPLVVVGSVLVTIFSSIFIGLYASVILYQERSFWRAVAYVIAMVAEFDEYT NDRLYLREGTFLPKPKYQKKGTSHSSELSVGGSLAKFSSVHVEAPAMLVPSFAHSKSVRETVQEVKMVQVWGVMMRSCEMRGRDLLDSGAITLADLSNYL KARGGNEASVICVGLPCYSFLQSLLNSIKAGSDGFLLSDGTEITHHNRPNDKLFDWFFQPLMVLKEQIRVIKLEEGEERFLQRVVLYGNDTQRMETWDNG SLVPQEALRAAQIQGITRRMIGMIRGISKFPTYRRRFRQVVKALIAYYAEKEGVTRSSSMRSVASIENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37030			unknown protein		Potri.007G042400 [exp]	0	1
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Potri.011G043500 [exp]	4.24	0.7194
AT1G58030		CAT2	cationic amino acid transporte...		Potri.013G065000 [exp]	7.21	0.7136	Pt-CAT3.2
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G039900 [exp]	10.72	0.6705
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	11.44	0.7523
AT5G22770		ALPHA-ADR	alpha-adaptin (.1.2.3)		Potri.004G189700 [exp]	19.36	0.6823
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120600 [exp]	34.85	0.7110
AT3G01720			unknown protein		Potri.001G336400 [exp]	43.81	0.6893
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Potri.006G215700 [exp]	54.54	0.6805
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	63.79	0.6553
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.015G140100 [exp]	66.53	0.6802

Compare expression of checked genes

Potri.007G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.