Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 134 / 7e-36 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 128 / 2e-34 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 106 / 1e-25 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 47 / 7e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31640 47 / 2e-05 B3 REM5 transcriptional factor B3 family protein (.1) AT3G18990 46 / 4e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 44 / 0.0002 B3 REM16 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G137600 [exp] 765 / 0 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 336 / 5e-111 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 310 / 2e-101 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 287 / 9e-92 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 284 / 1e-90 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 153 / 7e-43 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 150 / 6e-42 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 140 / 8e-39 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 125 / 3e-33 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035416 [exp] 539 / 0 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 461 / 2e-160 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10019353 [exp] 280 / 5e-92 ND / Lus10019873 [exp] 258 / 9e-81 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 233 / 1e-69 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 223 / 2e-67 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 206 / 1e-60 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 202 / 2e-59 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 181 / 1e-49 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 165 / 4e-46 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G042500.1 pacid=42765450 polypeptide=Potri.007G042500.1.p locus=Potri.007G042500 ID=Potri.007G042500.1.v4.1 annot-version=v4.1 ATGAGCGGAAGAGTGAAAAAAGAAGTTGAAGAAACAGATTTGATTAAACAGCAGCCATTTCATGAAGAGAACCGGAAATATGTGGAAGACGGAGACGGTA AGCAGAAGAGTCCGATGGAGACCACTGCTAAGCGTCTGAAGATTAAGAGAAGATATTCGGATTCCAAACTTAAGTTTGTGATATCAGGTCAGGCAGGGAA GTGTATCTGCTGTAGGCAGAATAGGGCTCCAGTTGAAAGATCAAACACTGTTGGAGAAACTAGGTCATCTGCTTTGATTCGGGCAGAAGAGGTCCAATCC AATCTAGAACCAGCATTCCCTAGCTTTGTGAAATCGTTGGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGGCTTCCTGGACAATTCTGTAGAGCAC ATTTACCACATGTGGATGCTACTGTGACTTTGCAAGATGAATGTGGGAAGGAATTCAAGATGAAATACATTGCATATAAGACAGGCTTGAGTGCTGGTTG GAGACAGTTCTGTGTTGCACACCGATTGTTTGAGGGGGATGTATTGGTCTTTCAATTAATCGAATCTTGCACATTTAAGGTGTACGTAATAAGGGCAAAT GATTTGACCGAAGTGGATGGTGCTCTAGGTCTGCTGAATTTGGATGCTCAAATTAAACAAAACATTGCAGATAACGCTGAAAGGGGCAATACTGCTAGTA AAAGTTCAAAGAGGAAGCGTCCCAGGTCTCTTCCACTAGCTATTGTTCAAAAGAAAAATAAGAAGTCTGGCCAACCAAGACCGTCAGTCCTGCAAGCTGG CCAACCCGCCGAGCAATCTGAAAATGATAGTGAAGAGGTTGGTTCAGAAGTTCTAGAAGGTTTCAAGTTATCGTTACCTGCTGTTCAATTTAAAGACATC AAAAGCTTTGAGGATTTCAACATTCTGGTTGATGGGTTACTTTTAGATTCGGAACTTTCAGAAGACATTCGGAATAAGTACTACAAACTCTGCTGCAGTC AGAATGCATTCCTTCATGACAATCTTATCAAGGGAGTTAATCTTAAGCTGATTGCTGGGATAATTTCTGAAACTGTTAATATTGCTGATGCAATGAGAGC TTGCACTCTTAACACCTCACGCGATGAATTTGCTACTTGGGACAAGGCTTTGAAGGCTTCTGAGCTATTTGGCATGAATGTTGGATTTTTACGCTCCAAG CTAGGTCTCCTTTTAAGCCTTGCCTTCGATTCTGAAGGCGCCACAAAAACAAGGAGGTATATAGAAGCTAGATTCAAACGAGTGCGAACTGAAGATGAGA TAATAAATCTTGAAGCAAAGCTTGTGGAATTGAAGGAAACCTATGAAAGATATGGTGCTGATGTTGAAAGGCTCAAGTCGAAAGCTGAAGGCTATGAGCT CAAGTTTCAAGAACAGGTTCTTGCTCCATGGTGA
AA sequence Show only first row Show all	>Potri.007G042500.1 pacid=42765450 polypeptide=Potri.007G042500.1.p locus=Potri.007G042500 ID=Potri.007G042500.1.v4.1 annot-version=v4.1 MSGRVKKEVEETDLIKQQPFHEENRKYVEDGDGKQKSPMETTAKRLKIKRRYSDSKLKFVISGQAGKCICCRQNRAPVERSNTVGETRSSALIRAEEVQS NLEPAFPSFVKSLVRSHVASCFWMGLPGQFCRAHLPHVDATVTLQDECGKEFKMKYIAYKTGLSAGWRQFCVAHRLFEGDVLVFQLIESCTFKVYVIRAN DLTEVDGALGLLNLDAQIKQNIADNAERGNTASKSSKRKRPRSLPLAIVQKKNKKSGQPRPSVLQAGQPAEQSENDSEEVGSEVLEGFKLSLPAVQFKDI KSFEDFNILVDGLLLDSELSEDIRNKYYKLCCSQNAFLHDNLIKGVNLKLIAGIISETVNIADAMRACTLNTSRDEFATWDKALKASELFGMNVGFLRSK LGLLLSLAFDSEGATKTRRYIEARFKRVRTEDEIINLEAKLVELKETYERYGADVERLKSKAEGYELKFQEQVLAPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.007G042500 [exp]	0	1
AT3G20070		TTN9	titan9 (.1.2)		Potri.009G049500 [exp]	2.82	0.7095	TTN9.1
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	13.30	0.7531	Pt-PMP.1
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	14.14	0.7243
AT5G25450			Cytochrome bd ubiquinol oxidas...		Potri.006G250000 [exp]	14.66	0.7085
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Potri.006G117600 [exp]	17.74	0.7019
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Potri.014G034700 [exp]	25.92	0.7061
AT3G44160			Outer membrane OMP85 family pr...		Potri.001G215500 [exp]	29.46	0.6508
AT1G48840			Plant protein of unknown funct...		Potri.015G046500 [exp]	32.31	0.6970
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Potri.001G329300 [exp]	34.72	0.6637
AT1G72175			RING/U-box protein with domain...		Potri.013G105400 [exp]	42.60	0.6706

Compare expression of checked genes

Potri.007G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.