Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66800 121 / 5e-35 unknown protein AT3G50640 76 / 1e-17 unknown protein AT4G34419 64 / 3e-13 unknown protein AT3G19200 57 / 1e-10 unknown protein AT3G05980 50 / 2e-07 unknown protein AT1G56020 47 / 1e-06 unknown protein AT5G19340 41 / 0.0001 unknown protein AT1G79060 41 / 0.0002 unknown protein AT1G67050 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141600 [exp] 156 / 5e-49 AT4G34419 95 / 2e-25 unknown protein Potri.009G102800 [exp] 147 / 2e-45 AT4G34419 95 / 2e-25 unknown protein Potri.008G150300 [exp] 61 / 2e-11 AT3G05980 154 / 3e-46 unknown protein Potri.010G090700 [exp] 59 / 6e-11 AT3G05980 141 / 2e-41 unknown protein Potri.005G098300 [exp] 50 / 2e-07 AT3G12970 162 / 3e-45 unknown protein Potri.007G065200 [exp] 43 / 6e-05 AT1G79060 119 / 1e-29 unknown protein Potri.015G045700 [exp] 42 / 9e-05 AT1G48780 107 / 8e-28 unknown protein Potri.017G115801 [exp] 40 / 0.0003 AT1G67050 51 / 1e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009349 [exp] 145 / 1e-44 AT5G66800 113 / 5e-32 unknown protein Lus10019352 [exp] 110 / 3e-31 AT5G66800 85 / 3e-21 unknown protein Lus10019867 [exp] 91 / 1e-23 AT3G19200 89 / 3e-23 unknown protein Lus10014046 [exp] 87 / 2e-21 AT3G19200 89 / 8e-23 unknown protein Lus10031795 [exp] 43 / 5e-05 AT1G79060 253 / 3e-80 unknown protein Lus10031218 [exp] 42 / 9e-05 AT1G79060 253 / 7e-80 unknown protein Lus10019301 [exp] 42 / 0.0001 AT5G67350 55 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G042600.1 pacid=42764915 polypeptide=Potri.007G042600.1.p locus=Potri.007G042600 ID=Potri.007G042600.1.v4.1 annot-version=v4.1 ATGGCATGTTTAGACATGTACAACTCCGAGCACAAAGGTCATTGCCCTCCCATGAGCCCTAGAATCTCCTTTTCTAATGATTTTGTTGATTCCCAACAGA TTATGAAGCAAGAAAGGAGCTCAAGAGAGACCCCAGTGTCCACTGACTTTGAATTCTCAGTGACAAACTACTCCATGATGAGTGCCGATGAGCTTTTCTT CAAGGGCAGGCTCTTGCCATTCAAAGATAATGGCAGCAACCAAATGCAAAGGACTATTAGAGATGAACTTCTTGTTGACGATGATGAGGGTGATGAAGTT TCACCGAGGCCACCTAAAGGTTCTACAAGGTGGAAAGGGCTCCTGGGCCTAAAGAGAAGCCACATTGGCTCCAAGAAAGTTGATAAGAGTGAAGGGTCTA TGGAGAGATCAGTTGGTGAAAGTAGAAGGTCCGGTTTTGTCCATGAGGAAGTGCAACATAGCAAGAGTTCACAGGAGATTGTGAGTGAAGGAGGATCAAG TTGCAGAGACGTGGAGATTGGAATATAG
AA sequence Show only first row Show all	>Potri.007G042600.1 pacid=42764915 polypeptide=Potri.007G042600.1.p locus=Potri.007G042600 ID=Potri.007G042600.1.v4.1 annot-version=v4.1 MACLDMYNSEHKGHCPPMSPRISFSNDFVDSQQIMKQERSSRETPVSTDFEFSVTNYSMMSADELFFKGRLLPFKDNGSNQMQRTIRDELLVDDDEGDEV SPRPPKGSTRWKGLLGLKRSHIGSKKVDKSEGSMERSVGESRRSGFVHEEVQHSKSSQEIVSEGGSSCRDVEIGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66800			unknown protein		Potri.007G042600 [exp]	0	1
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.014G106300 [exp]	1.41	0.9419
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	5.09	0.9305
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	6.92	0.9235
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	7.74	0.9291
AT5G47380			Protein of unknown function, D...		Potri.001G157200 [exp]	10.24	0.8420
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	11.40	0.9211
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Potri.012G022500 [exp]	11.48	0.9099
AT5G04190		PKS4	phytochrome kinase substrate 4...		Potri.007G074056 [exp]	14.42	0.8961
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.001G267900 [exp]	14.69	0.8805
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.009G101700 [exp]	16.58	0.8607	CYP707.4

Compare expression of checked genes

Potri.007G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.