Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15680 169 / 1e-53 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT1G24620 129 / 1e-37 EF hand calcium-binding protein family (.1) AT5G37770 115 / 1e-32 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G18210 113 / 1e-31 Calcium-binding EF-hand family protein (.1.2) AT1G66400 112 / 2e-31 CML23 calmodulin like 23 (.1) AT5G17470 111 / 3e-31 EF hand calcium-binding protein family (.1) AT5G42380 106 / 6e-29 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT1G73630 104 / 3e-28 EF hand calcium-binding protein family (.1) AT2G36180 101 / 3e-27 EF hand calcium-binding protein family (.1) AT5G21274 99 / 3e-26 ACAM-6, CAM6 calmodulin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102500 [exp] 196 / 3e-64 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.010G107100 [exp] 124 / 1e-35 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 120 / 4e-34 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.004G089400 [exp] 108 / 4e-30 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.012G048200 [exp] 108 / 5e-30 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 106 / 3e-29 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.015G039500 [exp] 107 / 4e-29 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G029700 [exp] 103 / 2e-27 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.014G070700 [exp] 101 / 1e-26 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014050 [exp] 191 / 7e-62 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 184 / 3e-59 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 115 / 1e-32 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10004330 [exp] 115 / 1e-32 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10031345 [exp] 108 / 2e-29 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 105 / 1e-28 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10018012 [exp] 103 / 6e-28 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 103 / 1e-26 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10027283 [exp] 98 / 9e-26 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 98 / 9e-26 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.007G042900.1 pacid=42765954 polypeptide=Potri.007G042900.1.p locus=Potri.007G042900 ID=Potri.007G042900.1.v4.1 annot-version=v4.1 ATGTCGCACTTGAGTTTTCTCAATTTTCATGGTCTTCCAAGAAATTCCTCCTCATCATCACTAACACCAACCGAGTCAAGAATTTATAGGGAGAAGAGGC AAAGCTGTAGTGTTTCAAAATCCATGCAACAAAACGTAATCCTGGGACAAAGCTCTAATGAGTCAAAATCTTTCCAACCGAATGTGGAAGAGATGAAATG GGTGTTTGACAAGTTTGACCTCAACAAAGATGGCAAGATTTCTCGTCAGGAGTACAAATCAGCACTGAGGGCCTTAGGCAAGGGACTAGAGGAATCTGAA ATGGTCAAGGCATTTCAGGCTACTGATATTGATGGGGATGGGTACATAGACTTCAAAGAATTCATGGAAATGATGCATAACATGGGAGATGGAGTAAAGA GCAGTGACATTGAAAGTGCTTTTCGAGTGTTTGACTTGGATGGGAATGGAAAAATAAGTGCAGAAGAATTAATGGAGGTCTTGAAGAGGTTGGGAGAGAG GTCTAGCTTGGATGCTTGTCGTAAAATGATTCGAGCAGTGGATGGTGATGGGGATGGTTTGATAGACATGAATGAATTCATGGGCATGATGACCCGTACC ATGAAAATGTGTTAG
AA sequence Show only first row Show all	>Potri.007G042900.1 pacid=42765954 polypeptide=Potri.007G042900.1.p locus=Potri.007G042900 ID=Potri.007G042900.1.v4.1 annot-version=v4.1 MSHLSFLNFHGLPRNSSSSSLTPTESRIYREKRQSCSVSKSMQQNVILGQSSNESKSFQPNVEEMKWVFDKFDLNKDGKISRQEYKSALRALGKGLEESE MVKAFQATDIDGDGYIDFKEFMEMMHNMGDGVKSSDIESAFRVFDLDGNGKISAEELMEVLKRLGERSSLDACRKMIRAVDGDGDGLIDMNEFMGMMTRT MKMC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.007G042900 [exp]	0	1
AT1G70880			Polyketide cyclase/dehydrase a...		Potri.004G020100 [exp]	3.74	0.8731
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.002G021500 [exp]	5.83	0.8556	CYP1.2
AT1G69588		CLE45	CLAVATA3/ESR-RELATED 45 (.1)		Potri.010G169300 [exp]	8.66	0.8438
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120340 [exp]	15.71	0.8309
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.006G191000 [exp]	17.14	0.8288
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.015G138600 [exp]	17.23	0.8123
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G110800 [exp]	17.32	0.8107
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	18.65	0.8407
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	22.09	0.8460
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	22.60	0.8397	HMGB915

Compare expression of checked genes

Potri.007G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.