Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58340 475 / 9e-164 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G29140 436 / 1e-148 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT4G23030 430 / 2e-146 MATE efflux family protein (.1) AT5G19700 428 / 1e-145 MATE efflux family protein (.1) AT5G52050 409 / 2e-138 MATE efflux family protein (.1) AT2G38510 389 / 1e-130 MATE efflux family protein (.1) AT1G71870 381 / 3e-127 MATE efflux family protein (.1) AT5G49130 360 / 2e-119 MATE efflux family protein (.1) AT4G22790 256 / 6e-79 MATE efflux family protein (.1) AT1G71140 228 / 2e-68 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135600 [exp] 498 / 3e-172 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 497 / 3e-172 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 493 / 2e-170 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.003G121400 [exp] 489 / 2e-169 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 401 / 4e-135 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 396 / 9e-133 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 390 / 8e-131 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 382 / 6e-128 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.003G116700 [exp] 288 / 4e-91 AT4G22790 441 / 2e-151 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007231 [exp] 496 / 1e-171 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 481 / 3e-166 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 482 / 4e-166 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10028230 [exp] 453 / 7e-155 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 409 / 6e-138 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 362 / 7e-120 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025237 [exp] 347 / 4e-113 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 295 / 4e-95 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 284 / 1e-89 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10019492 [exp] 224 / 9e-67 AT5G52450 485 / 6e-169 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.007G043100.1 pacid=42765243 polypeptide=Potri.007G043100.1.p locus=Potri.007G043100 ID=Potri.007G043100.1.v4.1 annot-version=v4.1 ATGAATGATCAAGGGATTTCAGCTTCAATTCCTCTTTTAGGCCATTATAGTTGTCAAAAATCAAGTTTACTACTAGGAAGTGATAAGAGTGTCTTACCAG ATAAGCAAGGATATTGTCTTCACTGCAAAGATCAAGCGTGGCGTCCTTCCCTTTCCCAGGTGGTTGCAGAGATCAAAGAGCTCTGTACCATAGCTTTTCC TATGATCATCACGGGCCTACTTATATATGGAAAATCTGCCATTTCTATGCTTTTCATGGGGAAATTAGGGAAAGAGGTTTTAGCAGGAGGGTCTCTCTCC ATTGGCATAGCAAACATCACTGGCTACTCTGTCATTTCCGGTCTAGCTATGGGCATGGAGGCCATCTCCTCTCAAGCCTGTGGAGCCAAGCAATGGCCTC TTATGGGCCAAACCCTTCAGCAAACGATAGCAATTCTCATCTTGGCATGCATACCCATATCTCTTCTTTGGCTCAACTTTGAACCTGTCCTTATCTTCTG TGGCCAAGACCGAGCCATCTCTTCTATTGCCTCTACTTACCTCGTATTTTCGCTACCAGATCTAGTCCTCCAATCTTTCATTAACCCTCTCAAAATTTAC CTAAGAACCCAGAACATAACCCTCCCTCTCATGCTCAGTGCAGCTTTTTCACTAGCTCTTCATGTCCCTATCAGTTACATCCTGACTTATCGTTTCAGCC TTGGCATTCGAGGCATTGCTGTGGCAGTAGCCATAACAGACTTGAATCTGCTCGCTGCCCTTCTGCTTTACCTTTACTTCTCCGGCATCTGTAGAAAGTC ATGGCAAGGCTGGTCCCTCCAATGCTTCGATGAATGGAAGCCGATTCTTAGCCTAGCCATCCCTAGTTGCATCTCTGTGTGCTTAGAATGGTGGTGGTAT GAACTTATGATAGTCCTTTCAGGAATACTTGCAAATGCTCCTGAGGCAGTTGCCACTATGGGAATTCTAATACAAGCAACTTCTCTTGTCTATATCTTCC CTTCGGCCCTTAGCCTTGCCGTATCAACTCGAGTTGGCAACGAGTTAGGCGCAAACCAGCCCAACAAAGCCAAAATGTCTTCTATAATCGCATTATTTTG TGCCGTTTTGATGAGTATTATCGCCATGTTGTTCATGACATTAACGAGGCATGCTTGGGGTCAGATTTTTACCACCGATAAAGCCATACTGTCATTGACA GCGACAACAATGCCGGTGGTTGGGCTCTGTGAGCTAGGGAACTGCCCACAGACCACCGGTTGTGGGGTGTTGAGGGGCAGTGCTAGGCCAACTCTTGGTG CCAACATAAATTTGGGTTCCTTCTATGGTGTTGGATTGCCTATAGCTATGTTAATGGGCATCGGTATGGGTTTGGGCTTGCTGGGCTTCTGGTTCGGCTT ACTGGTAGCCCAAGCTGTTTGTGCTATTGTCATGGTGGTGGTGCTAACCAGAACAGATTGGAAAATGCAGGCAAATCGAGCCAGAGAGCTTACTGGTATT GATAGTGAGGATGAAGCAGAGAGCAAAACGCTCGATGGATCAGTATCAATCATACGAGTGGATGACTTGATTATTGCTTAG
AA sequence Show only first row Show all	>Potri.007G043100.1 pacid=42765243 polypeptide=Potri.007G043100.1.p locus=Potri.007G043100 ID=Potri.007G043100.1.v4.1 annot-version=v4.1 MNDQGISASIPLLGHYSCQKSSLLLGSDKSVLPDKQGYCLHCKDQAWRPSLSQVVAEIKELCTIAFPMIITGLLIYGKSAISMLFMGKLGKEVLAGGSLS IGIANITGYSVISGLAMGMEAISSQACGAKQWPLMGQTLQQTIAILILACIPISLLWLNFEPVLIFCGQDRAISSIASTYLVFSLPDLVLQSFINPLKIY LRTQNITLPLMLSAAFSLALHVPISYILTYRFSLGIRGIAVAVAITDLNLLAALLLYLYFSGICRKSWQGWSLQCFDEWKPILSLAIPSCISVCLEWWWY ELMIVLSGILANAPEAVATMGILIQATSLVYIFPSALSLAVSTRVGNELGANQPNKAKMSSIIALFCAVLMSIIAMLFMTLTRHAWGQIFTTDKAILSLT ATTMPVVGLCELGNCPQTTGCGVLRGSARPTLGANINLGSFYGVGLPIAMLMGIGMGLGLLGFWFGLLVAQAVCAIVMVVVLTRTDWKMQANRARELTGI DSEDEAESKTLDGSVSIIRVDDLIIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.007G043100 [exp]	0	1
AT2G24800			Peroxidase superfamily protein...		Potri.006G267400 [exp]	4.89	0.8806
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	5.47	0.9066
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	6.32	0.8820
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	8.83	0.8905
AT1G78170			unknown protein		Potri.002G096100 [exp]	16.09	0.8789
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	17.02	0.8817
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	26.64	0.8639
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	28.42	0.8729
AT5G04190		PKS4	phytochrome kinase substrate 4...		Potri.007G074056 [exp]	29.22	0.8607
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	30.21	0.8635

Compare expression of checked genes

Potri.007G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.