Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37000 178 / 1e-54 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G043700 [exp] 478 / 2e-172 AT4G37000 206 / 3e-64 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.007G043600 [exp] 239 / 2e-78 AT4G37000 292 / 5e-98 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019349 [exp] 219 / 2e-68 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009352 [exp] 214 / 2e-68 AT4G37000 284 / 6e-95 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10017952 [exp] 52 / 7e-09 AT4G37000 59 / 1e-11 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06405 [poplar] [flax] RCC_reductase Red chlorophyll catabolite reductase (RCC reductase)
Representative CDS sequence Show only first row Show all	>Potri.007G043500.2 pacid=42765604 polypeptide=Potri.007G043500.2.p locus=Potri.007G043500 ID=Potri.007G043500.2.v4.1 annot-version=v4.1 ATGGTCATCTCCTTCGCCTCAGTCCCTCCTGATGCTGAATACTATCAGAACCAGAGCGGTGCTTCTCAAGGTTCTCTTTGCATCAACCGTGGAGTCGATT CCTCTCCTATTGATTTCATATTGTCGAGTTGGCTACACTTGTCCTTACCAAACGAAGGAGCAATGAACATCACTAACATTCAAGGCTATCTCAAATCCTC AACAGATACACCACATTTTCAATTCGAGCTGGTCCAATGCAGCCCAACATACTTCATCTTCTTTCTTGATTTAATTCCAAGGAAAGACATCGTCCTCCAC CCAGATTACCTCAACACTTTTTATGAAGATTCTCAACTCGAAGCACTTAGGAAACAACTTGACACACAAGTCCTTGAAGCCAAACCCTACTTCTCGTCTT CCCTCTACTTTCGAAATGTTGTTTCTCCCACAGGGATTTTGGTTAGCATAACATGTGGGGACGGTGGAACGACGGAGCGTGCTGAAGAAATTATTCGCGA CAATATTGATCCCATAGCTAATGAGGTTCTTGAACTATGGATGGATAGTTGTGTTTGTAAAGGAGGAACGGCTACTATTGAGGAAAATGAGAGGGATCAA CTGGAGAAAAGAGATCGAATGATAAAGAGTAGAGCAGTTGAGATGGATTTGAGCTCAAGCATGCCTATTCAATTTGGACAAGATGTGGCAGACAGAATCT TGGGAGTTATAAGAGGTGTTTTTAGGATATGA
AA sequence Show only first row Show all	>Potri.007G043500.2 pacid=42765604 polypeptide=Potri.007G043500.2.p locus=Potri.007G043500 ID=Potri.007G043500.2.v4.1 annot-version=v4.1 MVISFASVPPDAEYYQNQSGASQGSLCINRGVDSSPIDFILSSWLHLSLPNEGAMNITNIQGYLKSSTDTPHFQFELVQCSPTYFIFFLDLIPRKDIVLH PDYLNTFYEDSQLEALRKQLDTQVLEAKPYFSSSLYFRNVVSPTGILVSITCGDGGTTERAEEIIRDNIDPIANEVLELWMDSCVCKGGTATIEENERDQ LEKRDRMIKSRAVEMDLSSSMPIQFGQDVADRILGVIRGVFRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	0	1
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	1.41	0.9664
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.001G011500 [exp]	2.82	0.9627	PRX1.12
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	3.46	0.9653
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	5.47	0.9647
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	5.91	0.9540
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	6.70	0.9446
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	7.34	0.9503
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	7.34	0.9565
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176950 [exp]	12.16	0.8920
AT2G44930			Plant protein of unknown funct...		Potri.012G011800 [exp]	12.32	0.9537

Compare expression of checked genes

Potri.007G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.