Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37000 292 / 6e-98 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G043700 [exp] 258 / 1e-84 AT4G37000 206 / 3e-64 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.007G043500 [exp] 217 / 1e-69 AT4G37000 178 / 1e-54 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019349 [exp] 333 / 2e-111 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009352 [exp] 319 / 1e-108 AT4G37000 284 / 6e-95 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10017952 [exp] 53 / 9e-09 AT4G37000 59 / 1e-11 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06405 [poplar] [flax] RCC_reductase Red chlorophyll catabolite reductase (RCC reductase)
Representative CDS sequence Show only first row Show all	>Potri.007G043600.1 pacid=42766571 polypeptide=Potri.007G043600.1.p locus=Potri.007G043600 ID=Potri.007G043600.1.v4.1 annot-version=v4.1 ATGGCTGTCAGCTTCTCTCCAATTTTACACTTACCACACTCGTTACCATCTCCTCCTCCCCTCAAATCCTCAAGAACAAAAATCTCAGCCACTGCATCAC TCTCCTCCTCCTCCTCCTCATCTTCATCTGCGTCCCAAATGGATCTCCACAACCAGGGACGTCAGAAATTCATAGAATTCCCATTTGTCTCTGCCCCACA CAGGGATCTCATGGTTAATCTCTTATCAACGGTGGAGGATCGACTTGGCTCACACCTCCTCCCTTGTACACTTCCCCTTGACGTACAACACTGCCAGAAC GAAAGTGGGAGCGCCCAAGCTTCACTTCATATCAGATCAGGTCTTCAGTCTTCCCAGGTGGATTTCATATTGGGAAGTTGGCTGCACTGTAAACTACCTA CCGGCGGAGCATTGAACATAACTAGCCTATCTGCCTATCTGAACCCTTCAACAGATGCACCAAATTTCATGATTGAGCTAATCCAGAGTAGTCCAACATC ACTGGTCTTCATTCTTGACTTGCCTCCACGGAAGGACCCCGTCCTTTCTCCAGACTATCTTCAAACTTTCTATGAGAACACCCAGTTAGACACTCATAGG CAGATGCTTGCGAAACTCCCTGAGGTTCAACCCTACGTCTCTTCATCCCTTTATCTCCGTTCTGTCCTCTCGCCTACAGTCGTTATGATTCAAATAGGAG CTCAAGCGGGTGGACCAGAACGAATGGAGGAGATAGTAAAAAATCACATAGATCCTACTGCCCAGGAAGTTTTAGGGATTTGGTTGGATCATTGCGCTCG TGGAGAAAGATTGGTGGGAGAGGAAGAGAAGGCTTATATGATGAAGCGAGATGAGCTAATAAAGAAAAAAACTATTGAGATTGATCTAGGCACAAACTTT CCAAGATTGTTTGGTCCAGAAGTCACCGATAGAGTATTAGGAGCCATACAAAAGGTTTATAACATCTGA
AA sequence Show only first row Show all	>Potri.007G043600.1 pacid=42766571 polypeptide=Potri.007G043600.1.p locus=Potri.007G043600 ID=Potri.007G043600.1.v4.1 annot-version=v4.1 MAVSFSPILHLPHSLPSPPPLKSSRTKISATASLSSSSSSSSSASQMDLHNQGRQKFIEFPFVSAPHRDLMVNLLSTVEDRLGSHLLPCTLPLDVQHCQN ESGSAQASLHIRSGLQSSQVDFILGSWLHCKLPTGGALNITSLSAYLNPSTDAPNFMIELIQSSPTSLVFILDLPPRKDPVLSPDYLQTFYENTQLDTHR QMLAKLPEVQPYVSSSLYLRSVLSPTVVMIQIGAQAGGPERMEEIVKNHIDPTAQEVLGIWLDHCARGERLVGEEEKAYMMKRDELIKKKTIEIDLGTNF PRLFGPEVTDRVLGAIQKVYNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	0	1
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	1.41	0.9673
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Potri.001G318500 [exp]	2.00	0.9638	Pt-PHT5.1,PtrPHT1-12
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	2.00	0.9697
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	3.46	0.9660
AT1G75100		JAC1	J-domain protein required for ...		Potri.014G042600 [exp]	5.29	0.9499
AT1G48450			Protein of unknown function (D...		Potri.015G031200 [exp]	6.00	0.9566
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	8.36	0.9636	Pt-LAF6.1
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032733 [exp]	14.83	0.9477
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.003G127100 [exp]	16.24	0.9468
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	16.52	0.9501

Compare expression of checked genes

Potri.007G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.