Plant FIBer expression Database

Potri.007G043700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37000 206 / 2e-64 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G043500
[exp]
478 / 2e-172 AT4G37000 178 / 1e-54 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Potri.007G043600
[exp]
281 / 1e-93 AT4G37000 292 / 5e-98 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019349
[exp]
245 / 4e-77 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Lus10009352
[exp]
236 / 5e-76 AT4G37000 284 / 6e-95 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Lus10017952
[exp]
56 / 8e-10 AT4G37000 59 / 1e-11 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06405 RCC_reductase Red chlorophyll catabolite reductase (RCC reductase)
Representative CDS sequence
>Potri.007G043700.3 pacid=42765050 polypeptide=Potri.007G043700.3.p locus=Potri.007G043700 ID=Potri.007G043700.3.v4.1 annot-version=v4.1
ATGACCCTCCCGCTTTGCCCACATCCACATGTTTATCTAAATTCATTCTCAGCTTTACCATTGAAGAAAATATCCACCAGAAAGATCAGAAATTCAATAC
GTGCCTTATCGACCACACCATCTGAGATGGAACAGCCGATGAGAGGGCAGAGGTTAATGGACTTTCCTCATCTCTTGGCTCCTCACAAAGATTTAATGGT
GGGTCTAATCTCAGCCGTGGATAAACGCCTTCATGGTCATCTCCTTCCTTCTTCAGCCTCAGTCCCTCCTGATGCTGAATACTATCAGAACCAGAGCGGT
GCTTCTCAAGGTTCTCTTTGCATCAACCGTGGAGTCGATTCCTCTCATATTGATTTCATATTGACGAGTTGGCTACACTTGTCCTTACCAAACGGAGGAG
CAATGGACATCACTAACATCCAAGGCTATCTCAAATCTTCAACAGATGCACCACATTTTCAATTCGAGCTGGTCCAATGCAGCCCAACATACTTCATCTT
CTTTCTTGATTTAATTCCAAGGAAAGACCTTGTTCTTCACCCAGATTACCTCAAAACGTTTTATGAAGATTCTCAACTTGAAGCACTTAGGAAACAACTT
GACACACAAGTCCTTGAAGCCAAACCCTACTTCTCATCTTCCCTCTACTTTCGAAATGTTGTTTCTCCCACAGGGATTTTGGTTAGCATAACATGTGAGG
ACGGTGGAACGACGGAGCGTGCTGAAGAAATTATTCGCGACAATATTGATCCCATAGCTAATGAGGTTCTTGAACTATGGATGGATAGTTGTGTTTGTAA
AGGAGGAACGGCTACTATTGAGGAAAATGAGAGGGATCATCTGGAGAAAAGAGATCGAATGATAAAGAGTAGAGCAGTTGAGATGGATTTGAGCTCAAGC
ATGCCTATTCAATTTGGACAAGATGTGGCAGACAGAATCTTGGGAGTTATAAGAGGTGTTTTTAGGATATGA
AA sequence
>Potri.007G043700.3 pacid=42765050 polypeptide=Potri.007G043700.3.p locus=Potri.007G043700 ID=Potri.007G043700.3.v4.1 annot-version=v4.1
MTLPLCPHPHVYLNSFSALPLKKISTRKIRNSIRALSTTPSEMEQPMRGQRLMDFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSASVPPDAEYYQNQSG
ASQGSLCINRGVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKSSTDAPHFQFELVQCSPTYFIFFLDLIPRKDLVLHPDYLKTFYEDSQLEALRKQL
DTQVLEAKPYFSSSLYFRNVVSPTGILVSITCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVCKGGTATIEENERDHLEKRDRMIKSRAVEMDLSSS
MPIQFGQDVADRILGVIRGVFRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Potri.007G043700
[exp]
0 1
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G017232
[exp]
3.00 0.9653
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Potri.002G012000
[exp]
3.74 0.9675 FTSH2.2
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.009G099032
[exp]
4.47 0.9650
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.009G089300
[exp]
4.58 0.9687 Pt-CLPR1.1
AT5G26820 RTS3, MAR1, ATI... MULTIPLE ANTIBIOTIC RESISTANCE... Potri.005G012900
[exp]
5.09 0.9545
AT3G27110 Peptidase family M48 family pr... Potri.001G330800
[exp]
6.00 0.9620
AT5G65380 MATE efflux family protein (.1... Potri.007G010200
[exp]
6.63 0.9559
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Potri.014G146900
[exp]
7.41 0.9640
AT2G16980 Major facilitator superfamily ... Potri.004G178600
[exp]
8.71 0.9519
AT4G18960 MADS AG AGAMOUS, K-box region and MADS... Potri.011G075800
[exp]
8.94 0.9563 AG1.1

Potri.007G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.