Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36990 242 / 2e-79 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT1G46264 190 / 2e-58 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT5G62020 176 / 1e-53 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G11660 170 / 2e-50 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT2G41690 163 / 3e-49 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G17750 153 / 5e-43 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G02990 152 / 1e-42 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT1G32330 151 / 2e-42 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G51910 144 / 2e-41 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT2G26150 144 / 8e-41 HSF ATHSFA2 heat shock transcription factor A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108100 [exp] 190 / 2e-58 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.002G124800 [exp] 186 / 1e-56 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 176 / 1e-53 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.012G138900 [exp] 176 / 2e-53 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G273700 [exp] 173 / 1e-52 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.016G056500 [exp] 171 / 1e-52 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.014G027100 [exp] 174 / 4e-52 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.015G141100 [exp] 170 / 2e-51 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.003G095000 [exp] 160 / 1e-45 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009351 [exp] 273 / 1e-91 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10019348 [exp] 268 / 1e-89 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10008007 [exp] 194 / 7e-60 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 185 / 8e-56 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 176 / 1e-53 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10042646 [exp] 177 / 1e-52 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10001133 [exp] 175 / 8e-52 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10011065 [exp] 159 / 2e-45 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 159 / 2e-45 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10000312 [exp] 158 / 4e-45 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.007G043800.1 pacid=42766640 polypeptide=Potri.007G043800.1.p locus=Potri.007G043800 ID=Potri.007G043800.1.v4.1 annot-version=v4.1 ATGGCGCAGAGGTCAGCTCCGGCGCCGTTTTTGACGAAGACCTACCAGCTGGTGGATGATCCAAGCACTGATGATGTGATATCATGGAATGAAACCGGCA CAACCTTTGTCGTGTGGAAAACTGCTGATTTTGCCAAGGATTTGCTTCCTAATTATTTCAAGCACAACAACTTCTCTAGCTTTGTTCGCCAGCTCAATAC CTATGGCTTTAGAAAAATCGTGCCAGACAAATGGGAATTCGCCAACGAGAACTTCCGACGAGGACAGAAAGAGCTCCTCGCTGAGATCCGCCGCCGAAAG ACAGCGGCTGCGTCTCCGACAACCCAAACCTCGCCTGCCGGAAAATCCGGAGGCGCATCCTCTTCGTCCAACTCCGGAGAGGACCTGGGGTCCACGTCAA CGTCATCACCGGATTCGAAGAACCCGGGGTCGGTCGAAACTGCGGCGACACAAGTCGCCGACTTATCGATCGAGAACGAGCAGTTGAAGAAAGACAACGA CGTCCTGAGCAGTGAACTCGAGCAAGCTAAGAAACAATGTGGGGAGTTGATTAATTTTTTGACGGAGTATGTCAAGGTGAGCCCTGATCAAATCAATCGC ATCATTGGATGTGGTGGGTCCACGTGTAATGGTGAGGCCGATGTTGGCGATAATCAAAGTGAAGATGATGATGATGATGAAAATACTAGTGATGATACTG ACCATGATGATACCGATCATGATGGTGACGGTGGGGAAGGGGGGGGCTTGAAATTGTTCGGGGTTTTGTTGAAGTGTCAAAACAAGAAAAAGAGGGGCCG TGATGAGAAAATGGGGCTTGGGGGGGCCCGTGCAAAGGAAATCAAGATCTGTAATTGA
AA sequence Show only first row Show all	>Potri.007G043800.1 pacid=42766640 polypeptide=Potri.007G043800.1.p locus=Potri.007G043800 ID=Potri.007G043800.1.v4.1 annot-version=v4.1 MAQRSAPAPFLTKTYQLVDDPSTDDVISWNETGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFRRGQKELLAEIRRRK TAAASPTTQTSPAGKSGGASSSSNSGEDLGSTSTSSPDSKNPGSVETAATQVADLSIENEQLKKDNDVLSSELEQAKKQCGELINFLTEYVKVSPDQINR IIGCGGSTCNGEADVGDNQSEDDDDDENTSDDTDHDDTDHDGDGGEGGGLKLFGVLLKCQNKKKRGRDEKMGLGGARAKEIKICN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.007G043800 [exp]	0	1
AT4G36988		CPuORF49	conserved peptide upstream ope...		Potri.007G043850 [exp]	1.00	0.9386
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	3.16	0.8446
AT1G23710			Protein of unknown function (D...		Potri.015G076400 [exp]	5.47	0.7654
AT1G67920			unknown protein		Potri.010G107200 [exp]	7.00	0.7977
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	7.48	0.7865
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	7.93	0.8313
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.002G203500 [exp]	10.19	0.8244
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.001G320900 [exp]	15.16	0.7762	Pt-HSFA5.1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	15.96	0.8076
AT1G67850			Protein of unknown function (D...		Potri.010G047200 [exp]	18.97	0.6888

Compare expression of checked genes

Potri.007G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.