Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33985 134 / 2e-40 Protein of unknown function (DUF1685) (.1) AT3G50350 118 / 6e-34 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G15590 108 / 2e-30 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT5G28690 83 / 7e-20 Protein of unknown function (DUF1685) (.1) AT1G08790 82 / 8e-20 Protein of unknown function (DUF1685) (.1) AT3G04700 82 / 2e-19 Protein of unknown function (DUF1685) (.1) AT2G15610 79 / 9e-19 Protein of unknown function (DUF1685) (.1) AT2G43340 77 / 7e-18 Protein of unknown function (DUF1685) (.1) AT3G04710 79 / 2e-17 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT1G05870 75 / 5e-17 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138100 [exp] 233 / 5e-79 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.009G101300 [exp] 112 / 1e-31 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 93 / 1e-23 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 93 / 1e-23 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.007G126700 [exp] 77 / 8e-18 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 75 / 6e-17 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002400 [exp] 107 / 3e-29 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 101 / 3e-27 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 99 / 3e-26 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 98 / 4e-26 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 90 / 7e-23 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 85 / 1e-21 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 86 / 2e-21 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10025562 [exp] 74 / 2e-16 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10027022 [exp] 74 / 2e-16 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10005536 [exp] 62 / 9e-13 AT5G28690 119 / 3e-35 Protein of unknown function (DUF1685) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [poplar] [flax] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Potri.007G043900.2 pacid=42765626 polypeptide=Potri.007G043900.2.p locus=Potri.007G043900 ID=Potri.007G043900.2.v4.1 annot-version=v4.1 ATGTCCCTCCCCAACCCCCACCCGCCTCGACCACCACCACCATCGCCTCCAGAAGAACAAATAGAATATCGACCACCCATACGAAAACAACAACAAAATC ACCGACTACTAGGACCGTCTCCACTTTACAAACAACATTCATGGTCACCAGATATTGACAGGGATGAGGCATGGCTAAGGAGGAAAGGAAGCTATAAGAA AAAGAAAAGCAAAAGCGTTACTGATGAAGATCTTGATGAGCTTAAAGGTTGTATTGAGTTAGGTTTTGGGTTTGACTCTCCAGAAATGGATCGACGTTTG TCTGATACTTTTCCTGCTTTGGAACTTTATTATGCTGTTAACAAAAACTACTATGATCATTCCGCCTCCAAGCCTGTAGTCACTGCTACGCCGTCTTCGT CCACGGCGTCTGATTGTGACTCACCGTCTCCCCTAGGTAGCCCTCACACCATTTTTGGTCCAGGTGAAAATCCACAGACGGTGAAGACGAGATTAAGGCA GTGGGCACAGGTGGTTGCCTGTTCCGTGCGGCAAAGTTCAAGTTCAAGCTGA
AA sequence Show only first row Show all	>Potri.007G043900.2 pacid=42765626 polypeptide=Potri.007G043900.2.p locus=Potri.007G043900 ID=Potri.007G043900.2.v4.1 annot-version=v4.1 MSLPNPHPPRPPPPSPPEEQIEYRPPIRKQQQNHRLLGPSPLYKQHSWSPDIDRDEAWLRRKGSYKKKKSKSVTDEDLDELKGCIELGFGFDSPEMDRRL SDTFPALELYYAVNKNYYDHSASKPVVTATPSSSTASDCDSPSPLGSPHTIFGPGENPQTVKTRLRQWAQVVACSVRQSSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33985			Protein of unknown function (D...		Potri.007G043900 [exp]	0	1
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.014G089600 [exp]	7.14	0.7953
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.014G017300 [exp]	9.32	0.8286	SCOF.2
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	15.81	0.8068	SYP121.2
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	19.74	0.7652
					Potri.003G101900 [exp]	22.89	0.7891
AT3G19970			alpha/beta-Hydrolases superfam...		Potri.007G075400 [exp]	23.66	0.7771
AT3G28540			P-loop containing nucleoside t...		Potri.004G091250 [exp]	27.38	0.7868
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	28.63	0.7891
AT4G02040			unknown protein		Potri.008G198000 [exp]	29.49	0.7702
AT1G49050			Eukaryotic aspartyl protease f...		Potri.015G053300 [exp]	32.15	0.7692

Compare expression of checked genes

Potri.007G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.