Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 308 / 4e-93 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29120 301 / 1e-90 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 298 / 3e-89 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G27100 290 / 1e-86 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24720 270 / 3e-79 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G11210 260 / 2e-76 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G35290 260 / 1e-75 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G24710 258 / 6e-75 ATGLR2.3 glutamate receptor 2.3 (.1) AT3G07520 251 / 1e-72 ATGLR1.4 glutamate receptor 1.4 (.1) AT3G04110 246 / 5e-71 ATGLR1.1, GLR1 glutamate receptor 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028500 [exp] 482 / 4e-160 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028800 [exp] 437 / 5e-144 AT5G11210 360 / 3e-112 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.004G052400 [exp] 427 / 5e-138 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 423 / 2e-136 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052600 [exp] 393 / 3e-125 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062900 [exp] 392 / 8e-125 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 390 / 6e-124 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 388 / 6e-124 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 387 / 2e-123 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 321 / 2e-98 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 306 / 5e-93 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10038670 [exp] 301 / 1e-88 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10026235 [exp] 291 / 2e-86 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 285 / 2e-84 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 253 / 2e-73 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026552 [exp] 237 / 5e-67 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 233 / 1e-65 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10020109 [exp] 229 / 2e-64 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10027170 [exp] 224 / 8e-63 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF01094 [poplar] [flax] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Potri.007G044000.2 pacid=42765963 polypeptide=Potri.007G044000.2.p locus=Potri.007G044000 ID=Potri.007G044000.2.v4.1 annot-version=v4.1 ATGACTGGTTTTCTAGTTTTTCTTTATTCGATCCTTTTATTATCAATAACGTTCATATTATCAAATTCAGGTCAGCTGAATGATGAAGACACTGAGTTCA TTAGCATTATTGGTGCAGTTGTAGACTGCAGTACTCGTGTTGGTAGGGAAGAGAAAATAGCCATGGATATTGCTGTACAAGACATTTATAGATTGACTGG CCATAATTTGGCTCTACATGTTCTGGATTTGCCTGAGAACTCCGCCCGAGCTGCTTTTGCAGCAATTGATCTCATCCAAAACCAAAAATTGGAAGCGATT GTTGGTTCCATAACATGGCATCAGGCTGCATTAGTTGCTGAAATGGTTAACATTACCATTAAACGACCTATCATTTCCTTAACCACAGGATTATCTCTGA TAGTTCCAGATAAAGAACTTCCAGTAATTAGCATGTACCAAGATATATCTGTGCAGATCGAATGCATTGCTTCCATCATTGCATCCTTCAAGTGGCCAAA GGTGATTGCTATATATGAAGATAGATATTCCTACAGTAGTGATTTAGGCATTATCACTCTTCTGTCAGCTTCACTCCAAGATAGCGGCGTACAACTGGAA CACTACTTAGCCTTCCCGACACTGTCTTCTCTTTTAGACCCAAACACTACCATTCAGAACGAGTTAAATAAACTGAAGGGTAAACAAAACAGGGTCTTTA TACTACTTCAATCTTCATTAACTTTAGCAAGTTTATTGTTTGAAAATGCTAAGAAAATGGGAATGATGAGGAGAGGGTATGTGTGGATTGCTTCTGCTAG CTTCACTGGTCTTCTCGATTCTGTTAACTCATCCATGATCACCTCAATGCAAGGCGTGCTTGGTTGTAAGGCCTGCTATTTAGATACCACCGCATCCTTC AAAGATTTTGAAGTCAAGTTTGAGAGGAAGTTTAGAGCTGAATATCCGGAAGATAGGAACTCTCAACCAAGTATATTCGCACTTCGAGCTTATGATGCAA TTTGGACCGTTGCAAAGTCTTCTAAAATGTTACATGAGAAGAATTATTCAAAAACCTTACTTCAACATATCTTATCAAGTGATTTTGAAGGCCTAAGCGG TAGGATACACTTTACAAACTATAAGCTAACATACGGACCTAACTTTCAGATTGTTAATATAGTTGGTAAAAGCTACAGAGAGCTTGGATTTTGGTCACCG GAGTTTGGCTTCACCGACAACCTTGTCAAGAATAATAGTGGAAAGGATAGAAGTCAGTCCGGTGAAGAAGTTCTAAATCCAGTATACTGGCCAGGAGGCA AAACTTCTGTCCCAACTGGATTATCAGAATCCAATCTTCTTGAGGATAGAGGGAAGCAGCTGAGGATTGCGGTACCAGCTATATCAATGTTCAAGCAGTT TGTAAGAGTAAGCCATGATGAGATCCCTAACATAACATACATAACAGGATTTTCGGTTGGCGTATTTGAAGCTGCTGTGAAGTGTCTACGATACGCTTTG ATGTATGAAATTGTTCCTTTTCATGGTTCTTACGATGACATGGTAATGAAGGTTTCTCAAAAGGCTTTTGATGCAGCTGTTGGAGATATTGTAATAACAG CAAGCAGAGACCAGCCTATAGAGTTCTCACAGCCATATGTCGAATCAGGTCTCGCGATGCTCGTGGCGATGAAATCTGACAAGTCACACCATCATTGGTG GTTCTTGAAGGTCTATACTAAAGAGATGTGGTTTTTAATGGCAGCTATGACAGTCTTCACTGGTTTTGCTATTTGGGTTGTTGAACATGAAACTGAGCGT GGGTTTAATGGTTCATCCATTACACAGATTGGATCAATACTCTGGTATTCTTTTTCAATACTTACTTCTGCACAAGGAGAATCATTTAAAAGTCCATGGT CCCGTTTTCTGTCGGTGCCGTGGTTTTTTTTGGTGCTGATAGTCACATCAAGCTAA
AA sequence Show only first row Show all	>Potri.007G044000.2 pacid=42765963 polypeptide=Potri.007G044000.2.p locus=Potri.007G044000 ID=Potri.007G044000.2.v4.1 annot-version=v4.1 MTGFLVFLYSILLLSITFILSNSGQLNDEDTEFISIIGAVVDCSTRVGREEKIAMDIAVQDIYRLTGHNLALHVLDLPENSARAAFAAIDLIQNQKLEAI VGSITWHQAALVAEMVNITIKRPIISLTTGLSLIVPDKELPVISMYQDISVQIECIASIIASFKWPKVIAIYEDRYSYSSDLGIITLLSASLQDSGVQLE HYLAFPTLSSLLDPNTTIQNELNKLKGKQNRVFILLQSSLTLASLLFENAKKMGMMRRGYVWIASASFTGLLDSVNSSMITSMQGVLGCKACYLDTTASF KDFEVKFERKFRAEYPEDRNSQPSIFALRAYDAIWTVAKSSKMLHEKNYSKTLLQHILSSDFEGLSGRIHFTNYKLTYGPNFQIVNIVGKSYRELGFWSP EFGFTDNLVKNNSGKDRSQSGEEVLNPVYWPGGKTSVPTGLSESNLLEDRGKQLRIAVPAISMFKQFVRVSHDEIPNITYITGFSVGVFEAAVKCLRYAL MYEIVPFHGSYDDMVMKVSQKAFDAAVGDIVITASRDQPIEFSQPYVESGLAMLVAMKSDKSHHHWWFLKVYTKEMWFLMAAMTVFTGFAIWVVEHETER GFNGSSITQIGSILWYSFSILTSAQGESFKSPWSRFLSVPWFFLVLIVTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	0	1
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.001G229500 [exp]	1.00	0.9497
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	2.00	0.9384	CYP716.1
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G108500 [exp]	2.23	0.9001
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Potri.001G189500 [exp]	3.87	0.9053
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.016G069400 [exp]	5.19	0.8722
AT2G16750			Protein kinase protein with ad...		Potri.004G175100 [exp]	6.24	0.8279
AT1G74360			Leucine-rich repeat protein ki...		Potri.012G067600 [exp]	6.48	0.8639
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.002G170000 [exp]	7.07	0.8706
AT1G49030			PLAC8 family protein (.1)		Potri.012G060900 [exp]	7.48	0.8760
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.006G242100 [exp]	9.59	0.8484

Compare expression of checked genes

Potri.007G044000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.