Plant FIBer expression Database

Potri.007G044200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G67020 537 / 0 unknown protein
AT3G50340 515 / 0 unknown protein
AT2G22790 108 / 1e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G138300
[exp]
684 / 0 AT5G67020 520 / 0.0 unknown protein
Potri.007G008900
[exp]
163 / 1e-46 AT2G22790 153 / 2e-43 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019345
[exp]
228 / 8e-74 AT5G67020 248 / 2e-82 unknown protein
Lus10011589
[exp]
162 / 7e-46 AT2G22790 166 / 4e-48 unknown protein
Lus10009357
[exp]
149 / 9e-44 ND 167 / 2e-51
Lus10011575
[exp]
152 / 4e-42 AT2G22790 160 / 8e-46 unknown protein
Lus10019249
[exp]
139 / 2e-37 AT5G67020 141 / 2e-38 unknown protein
Lus10019344
[exp]
104 / 1e-27 AT5G67020 96 / 2e-25 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G044200.1 pacid=42766582 polypeptide=Potri.007G044200.1.p locus=Potri.007G044200 ID=Potri.007G044200.1.v4.1 annot-version=v4.1
ATGGTAGACGTGGACCGGAGAATGACCGGCCTAAACCCGGGTCATATTGCCGGCTTACGCCGTCTCTCAGCTCGAGCAGCTGCCCCATCAACAACCACCA
CACTCCCACCTCGCAACAGCCTCCTCTCTTTCTCTTCATTAGCTGATAAAGTAATTACCCACTTGCGCAGTTCTGGCATCCAAGTCCAACCTGGTCTTAC
TGAATCTGAATTCGCCCGATCGGAGGCTGAATTCGGCTTTGCTTTCCCTCCTGACCTCCGCGCCGTCCTCTCTGCTGGCCTCCCTGTCGGCCCAGGATTC
CCTGACTGGCGCTCTGCTGGTGCCCGCCTCCACCTACGCGCCTCCCTTGACCTCCCAATCGCTGCTATTTGCTTCCAAATTGCCCGAAACACTCTGTGGT
CGAAATCTTGGGGTCCGAGACCATCCGACCCGGAAAAAGCCTTACGAGTCGCGAGAAACTCACTTAAAAGAGCCCCTCTTTTGATTCCCATTTTTAACCA
TTGTTACATTCCTTGTCAGCCATCCCTAGCGGGTAATCCCATTTTCTTTATCGATGAAAGTCGGATCTTTTGTTGCGGGTTGGATTTATCAGATTTCTTT
GACCGTGAATCTCTCTTCCGGAGCTCCGAATCTCACCCGATTATCATAAAAAAACAGAAGTCTGTTAGTGAGAAATCTACTGGGTTATCCAACAATCTGT
CGCGGAAGAGTTTGGATACGGGTCTGGTAAACGGGTCGAGGACACCGAGATGGGTAGAGTTTTGGAGTGACGCGGCGGTGGACAGGAGGAGGAGGAATTC
AGCGTCGTCCTCGTCGGGATCTTCGTCCCCGGAACGGTTTTTTGAGATGAGAAGATCCGAAATACCGAAATGGGTGGGGGATTATATAGAGAAAATCGGG
TCGGTTTTGAGAGAAGGCGGGTGGAAGGAGTCCGACATAGAGGAAATGGTTGAGGTATCAGCGTCGGGTTTTTTCGAGGGTGAAATGGTAATTTTAGACA
ATCAAGCAGTCCTGGATGCTTTGCTTTTGAAAGTGGATCGGTTTTCGGACTCTCTACGTAAAGCCGGGTGGAGCTCCGAGGAAGTATCGGATGCCCTGGG
GTTTGATTTTAGACCAGAGAAGGAGAGGAAACCGGTTAAAAAACTGTCGCCTGAACTTGTTGAGAAAATTGGGAAATTGGCTGAGTCGGTTTCCCGGTGA
AA sequence
>Potri.007G044200.1 pacid=42766582 polypeptide=Potri.007G044200.1.p locus=Potri.007G044200 ID=Potri.007G044200.1.v4.1 annot-version=v4.1
MVDVDRRMTGLNPGHIAGLRRLSARAAAPSTTTTLPPRNSLLSFSSLADKVITHLRSSGIQVQPGLTESEFARSEAEFGFAFPPDLRAVLSAGLPVGPGF
PDWRSAGARLHLRASLDLPIAAICFQIARNTLWSKSWGPRPSDPEKALRVARNSLKRAPLLIPIFNHCYIPCQPSLAGNPIFFIDESRIFCCGLDLSDFF
DRESLFRSSESHPIIIKKQKSVSEKSTGLSNNLSRKSLDTGLVNGSRTPRWVEFWSDAAVDRRRRNSASSSSGSSSPERFFEMRRSEIPKWVGDYIEKIG
SVLREGGWKESDIEEMVEVSASGFFEGEMVILDNQAVLDALLLKVDRFSDSLRKAGWSSEEVSDALGFDFRPEKERKPVKKLSPELVEKIGKLAESVSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G67020 unknown protein Potri.007G044200
[exp]
0 1
AT5G20190 Tetratricopeptide repeat (TPR)... Potri.018G130300
[exp]
7.14 0.6981
AT4G00340 RLK4 receptor-like protein kinase 4... Potri.014G086900
[exp]
10.19 0.6351
AT2G16230 O-Glycosyl hydrolases family 1... Potri.014G182321
[exp]
10.39 0.7113
AT5G64410 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.009G079500
[exp]
16.85 0.5806
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Potri.019G016116
[exp]
18.70 0.6733
AT1G55230 Family of unknown function (DU... Potri.003G216500
[exp]
19.69 0.6950
AT5G28490 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPEND... Potri.019G018600
[exp]
33.09 0.6561
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.007G050000
[exp]
37.06 0.6832
AT1G21980 ATPIPK1, ATPIP5... phosphatidylinositol-4-phospha... Potri.002G088100
[exp]
39.34 0.6665 Pt-PIP5.2
AT5G54800 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHAT... Potri.011G135900
[exp]
40.34 0.6218 GPT.1

Potri.007G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.