Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36960 534 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 137 / 2e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 136 / 8e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 134 / 2e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 126 / 9e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 124 / 4e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 124 / 4e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 122 / 7e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 115 / 1e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 105 / 2e-25 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138600 [exp] 719 / 0 AT4G36960 540 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 141 / 4e-38 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 138 / 1e-36 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G040900 [exp] 136 / 3e-36 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 136 / 9e-36 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 134 / 3e-35 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 134 / 3e-35 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 133 / 9e-35 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 131 / 3e-34 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009360 [exp] 580 / 0 AT4G36960 529 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019341 [exp] 537 / 0 AT4G36960 471 / 7e-167 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 142 / 6e-39 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 140 / 3e-37 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 140 / 4e-37 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 138 / 2e-36 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 134 / 2e-35 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038806 [exp] 135 / 3e-35 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 134 / 3e-35 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 132 / 2e-34 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G044400.5 pacid=42765772 polypeptide=Potri.007G044400.5.p locus=Potri.007G044400 ID=Potri.007G044400.5.v4.1 annot-version=v4.1 ATGGACCGAAAGCTTGTGGTTTTGGGTATTCCATGGGAGATTGATACCGAGGGTTTGAGAGAATATATGACCAAATTTGGTGGATTAGAGGATTGTATTG TTATGAAGGAACGGTCATCAGGTCGATCTCGTGGTTTTGGATATGTTACTTTTGTGTCGGCTGAAGATGCTAAGGCTGTGCTATCAAGTGAACACTTTCT TGGTAAAAGAATGCTGGAAGTTAAAGTGGCTACCCCAAAGGAGGAGATGCGAGCGCCTTCAAAAAAAGCGACTAGGATATTTGTGGCCAGGATTCCACCA TCTGTGACAGAAACTACCTTTCGAAGTCATTTTGAGAAATATGGGGAGATAATAGACCTATACATGCCAAAAGATCATAGTTCGAAAGCACATCGTGGAA TTGGGTTCATCACATATGCAAGTGCAGATTCTGTGGATAATTTGATGGCTGAAACTCATGAATTGGGAGGCTCTACTGTAGTTGTAGATCGAGCAACGCC TAAGGAAGATGATTTTAGGCCAAATGGAAGAATGGCTCCTGGTGGATATGGTGCATACAATGCTTATATTTCTGCGGCTACTAGATATGCAGCTCTTGGT GCTCCCACCTTGTATGATCATCCTGGACCATTCTATGGAAGAGGGGAATCATCTAGAGGAATGGGTAAAAAGATCTTTGTTGGAAGGCTTCCTCAGGAAG CAAGTGCTGAAGATTTGCGCCAGTATTTTGGTAGATTTGGCCACATATTAGATGTATATGTTCCCAAGGATCCCAAGAGAACTGGCCACAGAGGTTTTGG ATTTGTAACCTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCAGCCACACCTATT GATGATGCTGGTCCAAGCGGAAATTTCATGATGAGTGGTCCTGAACCTTTTGGGAGTTATGCTGGTCCCATGCGCAACTTTGGCAGGATGTATGGAACCC TGGATTACGATGATGCAAGTGCATATATGGTTCCTTCTAAATGGGGTTATGGAATGGGGAGTGCAAGACCTTCAAGGGCAGATTGGAGGTACAGGCCATA CTAG
AA sequence Show only first row Show all	>Potri.007G044400.5 pacid=42765772 polypeptide=Potri.007G044400.5.p locus=Potri.007G044400 ID=Potri.007G044400.5.v4.1 annot-version=v4.1 MDRKLVVLGIPWEIDTEGLREYMTKFGGLEDCIVMKERSSGRSRGFGYVTFVSAEDAKAVLSSEHFLGKRMLEVKVATPKEEMRAPSKKATRIFVARIPP SVTETTFRSHFEKYGEIIDLYMPKDHSSKAHRGIGFITYASADSVDNLMAETHELGGSTVVVDRATPKEDDFRPNGRMAPGGYGAYNAYISAATRYAALG APTLYDHPGPFYGRGESSRGMGKKIFVGRLPQEASAEDLRQYFGRFGHILDVYVPKDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPI DDAGPSGNFMMSGPEPFGSYAGPMRNFGRMYGTLDYDDASAYMVPSKWGYGMGSARPSRADWRYRPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.007G044400 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	6.16	0.7430
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	8.48	0.6973	PSC450.2
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	11.53	0.6843
AT4G21980		ATG8A, APG8A	AUTOPHAGY-RELATED 8A, AUTOPHAG...		Potri.011G004300 [exp]	11.61	0.7149
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	13.00	0.7460
AT3G02070			Cysteine proteinases superfami...		Potri.014G140200 [exp]	18.70	0.6797
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	20.00	0.6916
AT3G17890			unknown protein		Potri.008G145400 [exp]	28.56	0.6693
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	29.56	0.6472
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	30.88	0.6804

Compare expression of checked genes

Potri.007G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.