Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) AT5G42930 488 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 462 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 416 / 5e-142 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT3G14360 365 / 7e-122 alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 75 / 2e-14 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 69 / 1e-12 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G06250 56 / 5e-08 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 50 / 3e-06 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 47 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138800 [exp] 526 / 0 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 493 / 2e-172 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 491 / 1e-171 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 461 / 3e-160 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 381 / 2e-127 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 371 / 1e-123 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 64 / 7e-11 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 63 / 2e-10 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 54 / 2e-07 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005092 [exp] 607 / 0 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 582 / 0 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 442 / 3e-152 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 442 / 7e-152 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 395 / 3e-133 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 393 / 1e-132 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 64 / 1e-10 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 52 / 5e-07 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 51 / 2e-06 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 50 / 2e-06 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.007G044500.2 pacid=42765672 polypeptide=Potri.007G044500.2.p locus=Potri.007G044500 ID=Potri.007G044500.2.v4.1 annot-version=v4.1 ATGGATTGCGACAAAGGGTTTTCGAGCAGTTATATGCTCTTGAAACCTGAAGAATTAACATTCTTTGATCTCGTCAACATCTTATTCTCCACTGACATCG AGAAAAGAAAGTTCGTTGATAGCGCGGAGGTGAAGGAGGAGGATTTTCAGCGTCGATGGCTCATATTCATCTCCATTATTGTTCAAAAATTGCTGCAGGT TTTTTCCAAGCCGATATCATTTTTCGGGTCACTTACGGAGATGTGGCTCAACCTTTTGTCTAGCAACGGTGGCTTTGGCAGCCTTCTACTAAATACCATG GAAGGGAAGGTGGTGATTCCGGAGAAAACATCAGCATCTTTCTTATCTTTTACTGGAAATTACGACTTACGAACAGAATTGGACAGAAACATTAAACATG GTGATCCGAGGTACTATGCAGAACTTTCTATTATGGCTTCTAAAGCATCATACGAGAACAAAGAGTACCTCGAAACTATTGTCAATCATCACTGGGAGAT GGAGTTATTGGGATCCTATGACTTCTGGAACGATTACCAAGATAAAGCCACAACACAAGCCTTCTTACTTCGTGACAAAAAAGATGACCATGATACAATT GTTTTGGCTTTCAGAGGTACTGAACCTTTTGATGCGGACGCTTGGTGTTCCGACTTTGATCTTTCCTGGTATGAGATTCCTGACGTTGGAAGGATCCATG GAGGTTTTATGAAAGCTCTGGGATTGCAAAAGTGCCTTGGTTGGCCTAAGGAAATGAAGCAAAATAGCTCACGCCCAGCACCATTAGCTTACTATGCCCT TAGAGATATATTGGAAGGCATTTTGTCACAAAATGATCAAACAAAATACATAGTGACCGGTCACAGCTTAGGCGGGGCGCTAGCAATTCTGTTCCCTGCA GTTTTGGCATTCCATGATGAGAAACTGTTGTTGGACAGGTTACAAGGGATCTACACATTTGGGCAGCCTAGAGTAGGAGATGGAAATTTCGGAAAATACA TGGAAAATATGTTAGAACAGAACACGATTCCATATTACAGGTTTGTTTACGGTTCTGATATAGTTCCTAGGTTGCCTTATGATGACAAGGCCCTCATGTT CAAGCACTTTGGGACATGCCTCTACTACAATAGGAACTATGAAGTACAGGTAGTTGAAGAAGAACCAAACAAGAATTACTTCTCTCTACGTGGGGCAATA CCCATGATGGTAAATGCATTTTTTGAGTTAATAAGAAGCTTCACCATCTCGAGCACCAAGGGACGAGACTACAAAGAAAGATGGTTCTTGAGAGGGTTTA GGGTAACTGGATTGGTACTCCCTGGCGTTCCAGCTCATCTTATCCAAGATTATGTTAACTCTACTCGTTTGGGATCAGCCAACGTATTTCTGTCAGGAAC CAAGAAGCAAGAGTAA
AA sequence Show only first row Show all	>Potri.007G044500.2 pacid=42765672 polypeptide=Potri.007G044500.2.p locus=Potri.007G044500 ID=Potri.007G044500.2.v4.1 annot-version=v4.1 MDCDKGFSSSYMLLKPEELTFFDLVNILFSTDIEKRKFVDSAEVKEEDFQRRWLIFISIIVQKLLQVFSKPISFFGSLTEMWLNLLSSNGGFGSLLLNTM EGKVVIPEKTSASFLSFTGNYDLRTELDRNIKHGDPRYYAELSIMASKASYENKEYLETIVNHHWEMELLGSYDFWNDYQDKATTQAFLLRDKKDDHDTI VLAFRGTEPFDADAWCSDFDLSWYEIPDVGRIHGGFMKALGLQKCLGWPKEMKQNSSRPAPLAYYALRDILEGILSQNDQTKYIVTGHSLGGALAILFPA VLAFHDEKLLLDRLQGIYTFGQPRVGDGNFGKYMENMLEQNTIPYYRFVYGSDIVPRLPYDDKALMFKHFGTCLYYNRNYEVQVVEEEPNKNYFSLRGAI PMMVNAFFELIRSFTISSTKGRDYKERWFLRGFRVTGLVLPGVPAHLIQDYVNSTRLGSANVFLSGTKKQE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67050			alpha/beta-Hydrolases superfam...		Potri.007G044500 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.006G171700 [exp]	2.00	0.9215
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	7.74	0.8845
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	8.83	0.9105
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.006G272700 [exp]	10.77	0.8315
					Potri.005G160500 [exp]	12.64	0.8802
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193500 [exp]	18.97	0.8788
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.005G223100 [exp]	21.65	0.8724
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088401 [exp]	21.84	0.8624
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G038500 [exp]	28.28	0.8676	Pt-GMMYB29.2
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	28.80	0.8618	CYP71AN3

Compare expression of checked genes

Potri.007G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.