Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AG12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 726 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 564 / 0 ARA12 Subtilase family protein (.1) AT4G34980 552 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 547 / 0 Subtilase family protein (.1) AT3G14240 531 / 8e-179 Subtilase family protein (.1) AT5G51750 529 / 4e-178 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 523 / 2e-175 Subtilase family protein (.1) AT1G01900 499 / 1e-166 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 494 / 1e-164 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G59810 463 / 2e-152 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026700 [exp] 906 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 885 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 882 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 633 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 579 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 578 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.004G173900 [exp] 561 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.006G141200 [exp] 561 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 559 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009365 [exp] 895 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 783 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 774 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 707 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 588 / 0 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 581 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10027891 [exp] 573 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 573 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10024814 [exp] 559 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10034900 [exp] 555 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.007G045100.1 pacid=42766305 polypeptide=Potri.007G045100.1.p locus=Potri.007G045100 ID=Potri.007G045100.1.v4.1 annot-version=v4.1 ATGGCTACTCCAATTCTCAAGGTGGGATGTTCACTTGTTTTCACAATCTCCCTGCTTGCTTCTACTTTGGCACAATCTGATACATATATCATCCACATGG ACCGGTCAGCCATGCCCAAAGCATTCACTGACCACCATAACTGGTATTTGGCCACTATTTCTTCTGTATCAGATACTGCTAAATCAACCTTCACCAGAAC CTCTAAGCATATCTACACTTATACTAGTTCTGTCCAAGGATTTAGTGCCAGTCTCACTAAATCTGAACTGGAAGCCCTCAAAAAATCCCCTGGCTACATT TCTTCGACTCGAGACCGTAAAATAAAAGTTCACACAACTCATACTTCAGAGTTTCTTGGTCTGAGTTCCAGTTCTGGTGCATGGCCAACCGCAAATTATG GTGAAGATATGATCATTGGATTGGTGGACACTGGAATTTGGCCAGAGAGTGAGAGCTTCAGCGACGAAGGAATGACAGAAGTTCCATCGAGATGGAAAGG GAAATGTGAGCCAGGTACCCAGTTCAATTCTTCCATGTGTAACAAGAAGCTCATCGGTGCTCGATATTACAACAAAGGCCTACTTGCAAATGATCCAAAG ATAAAAATTTCAATGAACTCTACAAGAGATACAGATGGACATGGAACACATACTTCATCCACTGCTGCAGGAAACTATGTGAAAGGAGCATCTTATTTTG GTTATGCCAATGGTACTTCCAGTGGTATGGCGCCACGGGCTAGAATAGCTATGTACAAAGCAATTTGGAGATACGGGGTCTATGAATCGGATGTTCTTGC TGCAATAGACCAGGCAATTCAAGATGGCGTGGATATATTGTCTTTGTCTTTGACTGTAGCCATTGAAGATGACTTCTTTTTGGAAGATGATACGATCGCA ATAGCTTCTTTTGCAGCAATGGAAAAGGGTGTATTTGTAGCAGCATCAGCTGGAAATGCGGGGCCTAATTACTATACATTAGTCAATGGAGCACCATGGA TGCTAACTATTGGTGCGGGTACTATAGACCGTGAATTTGAGGGAGTTTTAACTTTGGGTAATGGCAATCAAATTTCTTTCCCAACAGTGTATCCCGGGAA TTATTCCCTAAGCCACAAGCCTCTTGTTTTCATGGATGGGTGTGAAAGTGTGAATGAATTGAAGAAAGTTAAGAACAAGATTATTGTGTGCAAGGACAAC CTAACTTTCAGTGATCAAATTGACAACGCCGCATCTGCCAGAGTTTCAGGAGCTGTTTTCATCAGTAATCATACTTCCCCGTCAGAATTTTACACTCGAA GTTCATTTCCAGCAGTGTATATTGGTCTCCAAGATGGTCAGAGGGTAATAGACTACATAAAGGAGAGCAAAGATCCGAGAGGAACTGTGGTATTTCGTAA GACAGTTACCGGCACCAAGCCAGCACCAAGAGTAGATGGCTATAGTGGTAGAGGGCCATTTGCAAGCTGCCGCAGTGTCCTGAAGCCAGACCTTCTGGCT CCTGGGACATTGGTTCTTGCATCATGGTCTCCAATAAGTTCAGTGGCTGAGGTTCGGTCACATTCCTTGTTTAGCAAATTCAATCTCTTATCTGGCACCT CCATGGCTACTCCTCATGTTGCTGGCGTAGCTGCGCTTATAAAGAAAGCACATCCAGACTGGAGTCCTGCAGCCATCAGGTCTGCCCTTATGACCACAGC AGATTCACTAGACAATACTCTGAGCCCCATTAAAGATGCTTCAAACAATAACTTGCCGGCCACCCCTATTGACATAGGATCCGGCCACATAAATCCCAAC AAGTCACTTGATCCTGGGCTTATCTATGACGCGACAGCAGAGGACTACATAAAGCTTCTTTGTGCAATGAACTACACAAACAAACAAATCCAAATCATCA CTAGATCATCCCATCACGACTGCAAAAACAGGTCTTTGGATCTTAATTATCCATCTTTTATTGCTTATTTTGACAGCTATGACTCGGGTTCGAAGGAAAA GGTTGTGCACAAATTCCAAAGGACTCTAACCAATGTTGGAGAGCGAATGTCAAGTTATACTGCAAAGCTGCTTGGCATGGACGGTATAAAGGTGAGTGTG GAGCCACAGAAGTTGGTATTCAAGAAGGAACATGAGAAGCTGAGCTATACTCTTACTCTGGAGGGCCCCAAATCACTGGAAGAGGACGTGATCCATGGCT CTTTGAGCTGGGTGCATGATGGTGGTAAATATGTGGTTAGGAGTCCTATAGTAGCCACAAGCGTTACCCCATGA
AA sequence Show only first row Show all	>Potri.007G045100.1 pacid=42766305 polypeptide=Potri.007G045100.1.p locus=Potri.007G045100 ID=Potri.007G045100.1.v4.1 annot-version=v4.1 MATPILKVGCSLVFTISLLASTLAQSDTYIIHMDRSAMPKAFTDHHNWYLATISSVSDTAKSTFTRTSKHIYTYTSSVQGFSASLTKSELEALKKSPGYI SSTRDRKIKVHTTHTSEFLGLSSSSGAWPTANYGEDMIIGLVDTGIWPESESFSDEGMTEVPSRWKGKCEPGTQFNSSMCNKKLIGARYYNKGLLANDPK IKISMNSTRDTDGHGTHTSSTAAGNYVKGASYFGYANGTSSGMAPRARIAMYKAIWRYGVYESDVLAAIDQAIQDGVDILSLSLTVAIEDDFFLEDDTIA IASFAAMEKGVFVAASAGNAGPNYYTLVNGAPWMLTIGAGTIDREFEGVLTLGNGNQISFPTVYPGNYSLSHKPLVFMDGCESVNELKKVKNKIIVCKDN LTFSDQIDNAASARVSGAVFISNHTSPSEFYTRSSFPAVYIGLQDGQRVIDYIKESKDPRGTVVFRKTVTGTKPAPRVDGYSGRGPFASCRSVLKPDLLA PGTLVLASWSPISSVAEVRSHSLFSKFNLLSGTSMATPHVAGVAALIKKAHPDWSPAAIRSALMTTADSLDNTLSPIKDASNNNLPATPIDIGSGHINPN KSLDPGLIYDATAEDYIKLLCAMNYTNKQIQIITRSSHHDCKNRSLDLNYPSFIAYFDSYDSGSKEKVVHKFQRTLTNVGERMSSYTAKLLGMDGIKVSV EPQKLVFKKEHEKLSYTLTLEGPKSLEEDVIHGSLSWVHDGGKYVVRSPIVATSVTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67090			Subtilisin-like serine endopep...		Potri.007G045100 [exp]	0	1	Pt-AG12.1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	4.47	0.8310
AT4G25835			P-loop containing nucleoside t...		Potri.009G024400 [exp]	5.47	0.8177
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	7.07	0.7875
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	11.66	0.7890
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	16.06	0.7857
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047300 [exp]	19.79	0.7654
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G061900 [exp]	22.38	0.7955
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	25.37	0.7227
AT1G59530	bZIP	ATBZIP4	basic leucine-zipper 4 (.1)		Potri.014G013400 [exp]	26.87	0.7565
AT4G31980			unknown protein		Potri.003G207802 [exp]	28.00	0.7781

Compare expression of checked genes

Potri.007G045100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.