Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67100 1733 / 0 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1) AT5G63960 168 / 6e-42 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT1G67500 99 / 2e-20 ATREV3 recovery protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065800 [exp] 174 / 8e-44 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Potri.013G022200 [exp] 98 / 4e-20 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009366 [exp] 2023 / 0 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10019338 [exp] 1964 / 0 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10033513 [exp] 181 / 6e-46 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10020862 [exp] 144 / 2e-34 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10029911 [exp] 103 / 1e-21 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0194 [poplar] [flax] DNA_pol_B-like PF00136 [poplar] [flax] DNA_pol_B DNA polymerase family B CL0194 [poplar] [flax] PF08996 [poplar] [flax] zf-DNA_Pol DNA Polymerase alpha zinc finger
Representative CDS sequence Show only first row Show all	>Potri.007G045300.1 pacid=42766683 polypeptide=Potri.007G045300.1.p locus=Potri.007G045300 ID=Potri.007G045300.1.v4.1 annot-version=v4.1 ATGGCGGACGAGCAGCCAGCGGTGTTAAGTGGGAAGCGAAGAAGAGGAACAGAAGCCACGGCCAGATCCGAAGCCCTTGAGCGACTCAAAGCGCTCCGTC GTGGTGGCAGGAGATCTGAAAATGGCGGCGGGTACGCCATCAAAATGGAAGATCCAATCTATGATTCCGTCCCCGAGGACGAGTACAACAGTCTCGTCGC TCGCCGCCGAGAGGAAGCTCAGGGTTTCATCGTTGACGATGACGGCCTAGGTTACGGCGACGAAGGTGAAGAAGAGGACTGGTCTCAGGCCGGATTACCT CCGTCTTCGGATGAATCGGACGGCGAGGGTTTGAATAAGAGTAGATCTAGAAAGAAGAAAAGTGAAAAGAAAGAGAAAGAGAAAGAGAAAGAAGTGAAGA AAGGTAATGCTTCGTTGACGGCTGCTGCGGCGGCGATTATGGGGAAAACGAAGATATCGGCTATGTTTACATCAAATGTTTTTAAAAATAGGGATTCTGT TGGTAAGGTAAAGAGTTTTGATTGTGACAATATTGTTGATGATGTTATCGCGGAGTTTGCTCCTGATGAAGCTGATAGAGAAAGACGTAGAAGAGGACAG TTGATTGTGAAGAATGCTACACCAATTAAGAGTGAAAATCGATTTTTTGATAACGGTAATGATGTTAATTTTATGGTTAAAGCAGATTTGGATAGGGATT TTATTAATTATAAGAGTGGTGTTGATGAGAAAAAAGAGGGAATTGTGGAAGTGAAAGAGAAGGGAGAGGATAAATTGTCTAATCTGGTTAAAGAGGAGGT TGTAAGTGTTTTGGAAGTGAAAGCAGACGAGGCAGTTGTGAAGAAGGATGGTGGACGTACACTTAATGCGAAGATTAGTGATGAGGAGAGGGATCCAGCT TTGAGTGCTACAGCCGGGTGGAAAGAAGTGATGAATGGTAAGAATGGGGGTGAGGCTGTTGGTGGCGCTGGGGTAGTGGAGGAGGTTAAAAGTGGAGCAA ATTGTGAGGAGCAATCTGAGTTTGAGCTGGATGGTGATGGGTCATTACCCTTTTACATTCTTGATGCTCATGAAGAGATTTTTGGTGCTAACAGGGGCAC GATCTATTTGTTTGGGAAGGTGAAAGCCGGAAATACATATCATAGTTGCTGTGTGGTTGTAAAGAATATGCACAGATGTGTTTATGCAATTCCAAATAGT TCTATATTTCGTACTGATGAGATGAGCATGCTAGAGAAAGAGGTTGAAGAGTCACGGATTTCTTCCACAGATTTCCATAAAAAGCTGCAAGACATGGCAT ATGAACTAAAGAATGAAGTTGCAAGCCAATTGTTAAGTCTCAATGTTTCAAGTTTCAGCATGGCTCCGGTTAAGAGGAGATATGCATTTGAGCGCTCTGA TATACCAGCTGGAGAGAATTATGCACTCAAGATCAACTATCCATTTAAGGAACCTCCGCTCCCAGCAGATCTGAAAGGGGAAACTTTCTGTGCTTTGCTC GGAACTCATTGCAGTGCTTTAGAGCTTTTTCTCGTTAAAAGGAAGGTAAAGGGACCTTCGTGGCTTTCAGTTTCAAAATTTGCAACTTGCCCAGCTTCTC AAAAGGTGAGCTGGTGCAAGTTTGAGATCATTGTCGAATCTCCAAAGGAAATACAAGTTTCATCTTCATCAAATAGCAAACTAGAGATTCCTCCAGTGGT TGTTGCTGCAATAAATCTGAAAACTGTCATAAATGAAAAGCAGAATGTGAATGAAATAGTCTCTGCTTCTGTCATTTGCTGTCACAAGGCCAAGATTGAC ACTCCCATGTTGGCCTCCGAGTGGAAGAAACCTGGCATGCTGAGCCATTTTACTGTTGTTCGCAAGCTTGATGGAGGGATATTCCCAATGGGATTTTCCA AAGAGGTTACAGACAGAAACACAATGGCTGGATCAAATGTCTTAGCTATTGAAAGCAGCGAAAGAGCTTTGTTAAATCGTCTGATGATTGCATTACACAA ATTAGACAGTGATTTTCTTGTTGGACATAATATATCTGGTTTTGACCTGGATGTTCTCCTCCATAGGACACAGGCTTGCCGGGTGCCAAGTAGCACATGG TCCAAAATAGGACGTCTCAAGCGTTCTGTGATGCCTAAACTTACAAAAGGAAATGCCATTTTTGGCTCTGGAGCAAGTCCAGGGATCATGTCTTGCATTG CTGGCCGGCTCTTATGCGATACATATTTGGCTTCCCGTGATTTATTAAAAGAGGTTAGTTATTCCTTGACGCAACTTGCTAAGACTCGGCTGAACAAAGA CCGCAAGGAGATTGCACCACATGATATTCCCACAATGTTCCAGACGTCAAAGTCCCTTATTGAACTAGTTGAATATGGTGAGACAGATGCATGGTTATCT ATGGAACTCATGTTTCATTTGAGCATTCTTCCTCTCACACGCCAGCTGACCAATATCAGTGGGAATCTCTGGGGGAAAACTCTTCAAGGTGCGAGGGCAC AGAGAGTAGAGTATCTTCTATTGCATGCATTCCATGCAAAGAAATATATTGTCCCAGACAAGATGTCTTCTCGTGTAAAGGAAGCAAAAATGACAAAGAG GAGAATTAATAATGGCATTGAGGATAGAAATGCTGATGAGTTGGACACTGATGCTGCCAATTTTGAAAATGACAATCAACAGAGTGATCATGGGAAAAGA AAAAAAGGTCCTGCCTATGCAGGTGGATTGGTTTTGGAGCCTAAAAAAGGTTTATATGACAAATATGTATTGCTTCTGGATTTCAATAGTCTTTACCCCT CAATTATTCAGGAATACAATATCTGCTTCACAACAGTTGAAAGGTCTATGGATGGATTGGTTCCTCGTTTACCTTCCAGTAAAACAACTGGAGTTCTGCC TGAGTTGCTGAAAAATTTAGTTGAGAGAAGAAGAATGGTTAAGTCATGGATGAAGAATGCATCTGGTCTCAAAGTCCAGCAGCTTGACATTCAGCAACAA GCACTAAAGCTCACTGCAAATAGCATGTATGGATGCCTTGGGTTTTCCAATTCAAGATTCTATGCAAAGCCACTTGCAGAACTAATAACTCTACAAGGAA GGGAGATTTTACAAAGTACTGTTGATCTTGTTCAGAACAATTTGAACTTGGAGGTGATCTATGGTGATACAGATTCAATTATGATTTATAGTGGACTAGA TGATATTCCAAAAGCAAAAGCTATTGCAGGGAAAGTCATCCAGGAGGTTAACAAGAAGTACAGGTGTCTAGAAATTGATCTTGATGGCTTGTACAAAAGA ATGCTTCTTCTAAAGAAGAAGAAATATGCAGCTGTTAAGGTGCAATTCAAGGATGGGACACCATATGAGGTTATTGAACGTAAAGGTCTTGACATGGTTC GTCGTGACTGGAGCTTGCTATCAAAGGAATTGGGAGATTTCTGCTTGGCTCAAATTTTGTCTGGAGGGTCATGCGAGGACGTAATTGAATCAATACATAA CTCCCTCATGAAGGTCCAGGAAGATATGAGGAGTGGACAAGTAGCCCTTGAGAAATATGTCATCACAAAGACATTAACTAAACCACCTGAAGCCTATCCT GATGCCAAAAATCAACCCCATGCTCTGGTAGCACTAAGGTTGAAGCAAAGTGGTTATACAGCTGGTTGCTCTGCTGGTGATACAGTACCGTATATAATTT GCTGTGAGCAGGGTGCGGGTGCTTCTGCAGTAAGTTTAACAGGGATAGCCCAGCGTGCAAGACATCCTGATGAATTGAAATGTGATGATGGGAAATGGAT TATTGACATTGAGTACTACTTGTCGCAGCAAATTCATCCTGTGGTATCACGTTTATGTGCTTCAATCCAGGGTACAAGCCCAGAGCGTTTGGCTGATTGC TTGGGGCTTGACTCATCCAAGTTCCGTAGTAAATCAAGTGAATCTGTCCCTTCTAGCTCACTCCTGTTTGCTGCTGATGATGAGGAAAGATATCAGAGTT GTGAGCCGCTAATCTTGTCATGTCCCAGCTGCTCTGGTACTTTTCACTGTCCTCCTGTCTTCAGTTCCATTTGTACGTCAATTCTTGAGAAATCAAAAAA CCCACAAATCGAAGAATCTATATCCAATTTCTGGCATAGATTGTGTTGCCCTAAATGCCCAGAGGAAGGTGACTTGGGCAGAATATCTCCTGCAACGATG GCCAATCAGGTCAAAAGGCAAGCAGAGGGGTTTGTTTCCACCTACTATAAAGGCGTCATGATGTGTGATGATGAAACTTGTAAGCATACCACTAGGAGTC TCAACCTGAGGCTGGTTGGTGATTCCGAGAGAGGAACAGTTTGTCCAAGCTATCCACGCTGCAATGGGCGTCTAGTGAGAAAGTATACGGAAGCAGATTT GTACAAGCAACTGTCGTATTTCTGTCACTTGCTCGACACTGCTCGCTGCATTGAAAAGTTGCAGTCGGACGCAGGCACTAGAATACAGGTAGAGAAGGAG TTGATGAAAATCCGGCCAATGGTTGATATGGCACTTTCAACAGTTAAGAAGATGAGGGACAGATGTGCTTATGGGTGGGTGCAGTTGAATGGCCTTGCAG TCACAGTATAA
AA sequence Show only first row Show all	>Potri.007G045300.1 pacid=42766683 polypeptide=Potri.007G045300.1.p locus=Potri.007G045300 ID=Potri.007G045300.1.v4.1 annot-version=v4.1 MADEQPAVLSGKRRRGTEATARSEALERLKALRRGGRRSENGGGYAIKMEDPIYDSVPEDEYNSLVARRREEAQGFIVDDDGLGYGDEGEEEDWSQAGLP PSSDESDGEGLNKSRSRKKKSEKKEKEKEKEVKKGNASLTAAAAAIMGKTKISAMFTSNVFKNRDSVGKVKSFDCDNIVDDVIAEFAPDEADRERRRRGQ LIVKNATPIKSENRFFDNGNDVNFMVKADLDRDFINYKSGVDEKKEGIVEVKEKGEDKLSNLVKEEVVSVLEVKADEAVVKKDGGRTLNAKISDEERDPA LSATAGWKEVMNGKNGGEAVGGAGVVEEVKSGANCEEQSEFELDGDGSLPFYILDAHEEIFGANRGTIYLFGKVKAGNTYHSCCVVVKNMHRCVYAIPNS SIFRTDEMSMLEKEVEESRISSTDFHKKLQDMAYELKNEVASQLLSLNVSSFSMAPVKRRYAFERSDIPAGENYALKINYPFKEPPLPADLKGETFCALL GTHCSALELFLVKRKVKGPSWLSVSKFATCPASQKVSWCKFEIIVESPKEIQVSSSSNSKLEIPPVVVAAINLKTVINEKQNVNEIVSASVICCHKAKID TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFSKEVTDRNTMAGSNVLAIESSERALLNRLMIALHKLDSDFLVGHNISGFDLDVLLHRTQACRVPSSTW SKIGRLKRSVMPKLTKGNAIFGSGASPGIMSCIAGRLLCDTYLASRDLLKEVSYSLTQLAKTRLNKDRKEIAPHDIPTMFQTSKSLIELVEYGETDAWLS MELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKMSSRVKEAKMTKRRINNGIEDRNADELDTDAANFENDNQQSDHGKR KKGPAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSMDGLVPRLPSSKTTGVLPELLKNLVERRRMVKSWMKNASGLKVQQLDIQQQ ALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIPKAKAIAGKVIQEVNKKYRCLEIDLDGLYKR MLLLKKKKYAAVKVQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVIESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP DAKNQPHALVALRLKQSGYTAGCSAGDTVPYIICCEQGAGASAVSLTGIAQRARHPDELKCDDGKWIIDIEYYLSQQIHPVVSRLCASIQGTSPERLADC LGLDSSKFRSKSSESVPSSSLLFAADDEERYQSCEPLILSCPSCSGTFHCPPVFSSICTSILEKSKNPQIEESISNFWHRLCCPKCPEEGDLGRISPATM ANQVKRQAEGFVSTYYKGVMMCDDETCKHTTRSLNLRLVGDSERGTVCPSYPRCNGRLVRKYTEADLYKQLSYFCHLLDTARCIEKLQSDAGTRIQVEKE LMKIRPMVDMALSTVKKMRDRCAYGWVQLNGLAVTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	0	1
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	1.73	0.9146
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	2.00	0.9114
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	3.46	0.8483
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	5.19	0.8714
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	5.29	0.8668
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.002G033800 [exp]	5.91	0.8496	AUL1.3
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	7.00	0.8327
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.012G126000 [exp]	10.95	0.8026	CBP.2
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	11.83	0.7991
AT1G76740			unknown protein		Potri.002G066450 [exp]	14.14	0.7618

Compare expression of checked genes

Potri.007G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.