Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67130 591 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 388 / 9e-133 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 377 / 4e-129 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 366 / 4e-124 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 335 / 9e-113 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140100 [exp] 684 / 0 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 429 / 7e-149 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 420 / 4e-145 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 417 / 6e-144 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 405 / 8e-140 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 392 / 4e-135 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 376 / 2e-128 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 268 / 6e-88 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009368 [exp] 637 / 0 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 396 / 1e-135 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 390 / 4e-134 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 392 / 5e-134 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 388 / 3e-132 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 380 / 3e-130 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 373 / 8e-128 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 360 / 3e-122 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 243 / 1e-78 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 157 / 1e-45 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G045700.4 pacid=42766527 polypeptide=Potri.007G045700.4.p locus=Potri.007G045700 ID=Potri.007G045700.4.v4.1 annot-version=v4.1 ATGTCCCCGCGTTTCACGGTCCACCGTAGCCTATGCAGAGCCCCTCTTGCAATCGGCTTCCTTTACCTCTCTCTGCTACTCTCCTCATTCTTGATAGCTC ATGCACAGGTGTTACAATCCTGTACAGAAGCCACAAATTGTGGGCCAGGTCTTTATTGTGGAAATTGCCCTGCTTTAGGCAAGACTCAACCCATTTGCAC CAGAGGCCAAGCTATCATACCTAATTCTTTTATAAATGGGTTGCCTTTTAATAAGTATACATGGTTAGTTACTCATAATTCTTTTAGCATTGTTGATGCA CCTCCTTTGCCTGGTGTTCAGAGGCTTACATTTTATAATCAAGAAGACACTGTGACAAATCAGTTGAGGAATGGTGTGAGGGGGTTGATGTTGGATATGT ATGATTTCGAGGGCGACATCTGGCTCTGCCATTCATTTCGAGGGCAATGTTACAACTTCACTGCGTTTCAACCTGCAATAAACACTTTGAAGGAAGTGGA ATCATTCTTGAGCGAGAATCCAAATGAGATTGTGACAATTATCATTGAGGACTACGTCCATACTCCAAAAGGCTTGATAAATTTGTTCACCAATGCTGGT TTGGATAAGTATTGGTTTCCTGTGTCTAAGATGCCGAAAAAGGGAGAAGATTGGCCTACTGTGACAGAGATGGTGCAAGAAAATCACAGGCTTGTGGTAT TCACTTCTATTGCTTCAAAGGAAGCAGAGGAAGGAGTTGCTTATCAATGGAAATATATGTTGGAAAATGAGGCTGGAGATCCTGGGGTAAAACCAGGCTC GTGCCCAAGCAGAAAAGAATCAAAGCCACTGAATTCCAAAAGTGCATCACTTTTTTTAATGAATTACTTCCCAACATATCCAGTTGAAACTGAAGCTTGC AAAGAGCATTCAACTCCACTTGCTCAGATGGTTGGTACCTGCTATAAAGCAGCTGGAAATGTGATGCCAAATTTTTTGGCAGTCAACTTTTACATGAGGA GTGATGGTGGTGGTGTTTTTGATGCTATGGATAGAATGAACGGACAGGCATGCGGTTGTAGCACTGTGACTGCTTGCCAGGCTGGAGCACCTTTTGGATC TTGCAATAATGTTACCATACCTAATGTAAGTCCTGTAACAAATACCGCGGGAAGTACAAGCCCACTGTCAAATACTGCAGGAAGCTTTACTGGATCTGTT CAATTCTCGAAATCTGCATCAAAAATCCAATCTCCAAATAGCTTTGTTTTGTTCTTGTTCTTTTCTATTAGCAGCATCTTGATCATATTATGGATACAGT GA
AA sequence Show only first row Show all	>Potri.007G045700.4 pacid=42766527 polypeptide=Potri.007G045700.4.p locus=Potri.007G045700 ID=Potri.007G045700.4.v4.1 annot-version=v4.1 MSPRFTVHRSLCRAPLAIGFLYLSLLLSSFLIAHAQVLQSCTEATNCGPGLYCGNCPALGKTQPICTRGQAIIPNSFINGLPFNKYTWLVTHNSFSIVDA PPLPGVQRLTFYNQEDTVTNQLRNGVRGLMLDMYDFEGDIWLCHSFRGQCYNFTAFQPAINTLKEVESFLSENPNEIVTIIIEDYVHTPKGLINLFTNAG LDKYWFPVSKMPKKGEDWPTVTEMVQENHRLVVFTSIASKEAEEGVAYQWKYMLENEAGDPGVKPGSCPSRKESKPLNSKSASLFLMNYFPTYPVETEAC KEHSTPLAQMVGTCYKAAGNVMPNFLAVNFYMRSDGGGVFDAMDRMNGQACGCSTVTACQAGAPFGSCNNVTIPNVSPVTNTAGSTSPLSNTAGSFTGSV QFSKSASKIQSPNSFVLFLFFSISSILIILWIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.009G068000 [exp]	1.41	0.8315
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G135000 [exp]	2.44	0.8289
AT1G53760			unknown protein		Potri.001G161800 [exp]	2.64	0.8069
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	4.89	0.7981	EXP2.10
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.003G212400 [exp]	7.21	0.8198
AT5G58490			NAD(P)-binding Rossmann-fold s...		Potri.009G076300 [exp]	7.54	0.7821	Pt-CCR.7
AT3G13870		GOM8, RHD3	GOLGI MUTANT 8, Root hair defe...		Potri.003G038900 [exp]	7.54	0.7349
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.009G058600 [exp]	8.12	0.8092	Pt-SMT.2
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	8.48	0.8199
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	10.95	0.7788

Compare expression of checked genes

Potri.007G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.