Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CLF.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23380 1063 / 0 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT4G02020 651 / 0 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT1G02580 341 / 5e-105 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT5G42400 98 / 2e-20 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G27910 96 / 8e-20 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 95 / 1e-19 SET29, ATX5, SDG29 SET domain group 29 (.1) AT2G31650 93 / 4e-19 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G76710 90 / 1e-18 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT3G61740 90 / 5e-18 SDG14, ATX3 SET domain protein 14 (.1.2) AT1G05830 89 / 8e-18 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140200 [exp] 1585 / 0 AT2G23380 1042 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.014G120100 [exp] 679 / 0 AT4G02020 877 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G195700 [exp] 503 / 8e-164 AT4G02020 883 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G001000 [exp] 103 / 2e-22 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 101 / 1e-21 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 99 / 3e-21 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G098400 [exp] 95 / 1e-19 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 94 / 2e-19 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.015G014300 [exp] 94 / 2e-19 AT5G53430 1322 / 0.0 SET domain group 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019336 [exp] 1085 / 0 AT2G23380 905 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10009369 [exp] 1003 / 0 AT2G23380 804 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10041386 [exp] 376 / 9e-117 AT4G02020 489 / 9e-161 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Lus10025172 [exp] 103 / 4e-22 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 102 / 1e-21 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10012626 [exp] 96 / 8e-20 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 96 / 1e-19 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10016600 [exp] 93 / 2e-19 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10026725 [exp] 94 / 4e-19 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 93 / 5e-19 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.007G045800.1 pacid=42765589 polypeptide=Potri.007G045800.1.p locus=Potri.007G045800 ID=Potri.007G045800.1.v4.1 annot-version=v4.1 ATGGCGTCGTCGTCGCCGCCGCCTCCGCCTGCTTCCGTCACCAGATCGGAGCCTCCTAAAGTCTCACCGGCGATGGAGTCTGATGAAGAGACAGCTTTAA CAAGCAAAATGGTTTTATCAGTTATTGAATCATTAAAGAAGCAAGTTGCAGCTGACCGATGTTTTTATGTTATGAAAAGGATGGAAGACAACAAACAGAA GTTGGTTGGTGTTACGAACCACCTCTATAAGCTGTCAAAGGAAAGGAAGAACAGTTGGATTAGTGATACTGACAATAGTGTAGATTTATTTACAAAGAGG CAAAAGGATGCACTCAGTATGCATGGTGGTATTGATTCAAGTAATGTAGATAAAGATAGTCTTGGCTCTGAAGAAGATGGTAATACTTCTACTGCAGTTC TTTTGGGATCCAGTATCCCAGTAAAGAATGCAGTACGGCCAATTAAGCTACCTGAAGTGAAGAGGTTACCCCCTTACACATCATGGATTTTTTTGGACAG AAATCAAAGAATGACAGAGGACCAATCGGTGCTTGGTCGAAGGAGAATTTATTATGACCAAAATGGTGGTGAAGCACTAATCTGCAGTGACAGTGAAGAG GAAATAATTGATGAAGAAGAGGAGAAGCGAGATTTTTTAGAATCTGAAGATTATATTCTACGGATGACTATAAAAGAAGCTGGATTGTCCGATCCAGTTG TGGAATCACTAGCACAGTGTTTTTCTAGAAGTTCTAGTGAAGTCAAGGCAAGATTTGAGGTTCTTAAGAAGGAAGAGAAGGCCGTGGAGGATTCTAAGAA TAAAGATAATGAAGCACGAACACTGAATTCTTTTCTTGATAAAGATCTTGAAGTTGCTTTGGATTCTTTTGACAACCTATTTTGTCGCCGATGTCTTGTA TTTGATTGCAGATTACATGGATGTTCACAGGATCTTATCTTCCCTGCTGAGAAACAATCTCCATGGAGCTATCCAGATGACAACATAACATGTGGTCCAC AGTGCTACAAATCGGTTTTGAAATCAGAGAGAATTTCTTCAGGGATTTCTCCTGAGCGTGGGTTTATTGAAGAAAATTCTGTTTGTCAATCAGATGGTGC TGGGGTGCCTATAACATCAAGAAAGAAATCTTCTGCTCCATCTGCCAACCGGAGGGTGAAGTCCTGCCAAAGTGAAAGTGCTTCGTCAAATGCAAAAAAC ATTTCAGAGAGCAGTGATTCAGAGATTGGACCTCGGCAAGACACCTCTCCCACTAGTCAGTTGTCACCTTCCAAGATTAAGCTTGTTGGGAAAGGTGGGA CTTGTAAAAGGAACAGCAAGCGGGTGGCTGAACGTGTTCTAAGTTGCATGCGGAAAAGGCAGAAGAAAATGGTGGCTTCTGATACTGATTCTGTTGCTAG TGGAGGCCTTCTGTCAAGTGATATGAAACTTAGGTCCACTTCACACAAAGGAAAGGAAGATGCAAGTTCTTCTTCCCATAAGAATTTGAAATCTCCCACC ACTGCAAGGTCTAGGAGAAAGAGTGAGTTTCATGATGGTCCATCAAGTGAGATGGTCATGGATCCACCTGTGCCTAGCAGTGATGACACCTTTAGGAAAG AAGAGTTCATAGACAAAAATACATGTAAAAAAGAGTTAAGTGATAACAGATCTTGGAAAGCTATTGAAAAAAGCCTATTTGAGAAAGGTGTTGAGATTTT TGGCGGGAACAGTTGCTTAATTGCTAGGAACCTCTTAAATGGCTTAAAGACGTGTTGGGAGGTTTTTCAATATATAACTCGCTCTGAGAATAGGCTAGCC TGTGAGGCAGGTGATGCTGGAACTCTTGGTGAAGGCTACTCCAAGTTTGACTGCAGCGGAACAGTGGGTAAGAATGAAGCAAGAAGGAGATCAAGATTTT TAAGGAGAAGAGGTAGAGTTCGCCGCTTGAAGTACTCTTGGAAATCTACTGCTTACCATTCTATTAGGAAGCGGATAACTGAAAGAAAAGATCAACCCTG CCGTCAGTATAATCCATGTAGTTGCCAAGCTGCTTGTGGAAAGCAGTGCACATGTCTGCTAAATGGCACCTGTTGTGAGAAGTATTGCGGATGTCCTAAG AGTTGCAAGAACCGATTTAGAGGCTGTCATTGTGCCAAAAGTCAATGTCGAAGTCGTCAATGTCCATGCTTTGCTGCAGACAGGGAATGTGATCCAGATG TCTGTAGGAATTGTTGGGTCAGTTGTGGTGATGGTACTCTTGGTATCCCCAGCCAAAGGGGTGATAATTATGAATGCAGAAATATGAAGCTTCTTCTCAA ACAACAACAAAGGGTTTTACTCGGAAGATCTGATGTATCAGGCTGGGGTGCTTTCTTGAAGAATAGTGTCGGCAAGCATGAGTACCTGGGTGAGTACACT GGAGAGCTGATTTCACATAGGGAAGCAGATAAGCGTGGGAAGATCTACGACCGTGAAAATTCATCATTTCTCTTCAATCTCAACGATCAGTTTGTTCTTG ATGCATACCGTAAGGGTGACAAACTCAAGTTTGCCAACCACTCTCCAGAACCAAATTGCTATGCAAAGGTCATAATGGTTGCAGGGGATCACCGAGTGGG CATATTCGCCAAAGAAAGGATTAATGCAGGGGAGGAACTTTTCTATGATTATCGTTATGAGCCAGACAGAGCTCCTGCTTGGGCTAGGAAGCCTGAAGCG TCTGGATCAAAGAAAGAAGATGGCGGCCATTCAAGTGGCCGTGCCAAGAAGCTTGCTTAA
AA sequence Show only first row Show all	>Potri.007G045800.1 pacid=42765589 polypeptide=Potri.007G045800.1.p locus=Potri.007G045800 ID=Potri.007G045800.1.v4.1 annot-version=v4.1 MASSSPPPPPASVTRSEPPKVSPAMESDEETALTSKMVLSVIESLKKQVAADRCFYVMKRMEDNKQKLVGVTNHLYKLSKERKNSWISDTDNSVDLFTKR QKDALSMHGGIDSSNVDKDSLGSEEDGNTSTAVLLGSSIPVKNAVRPIKLPEVKRLPPYTSWIFLDRNQRMTEDQSVLGRRRIYYDQNGGEALICSDSEE EIIDEEEEKRDFLESEDYILRMTIKEAGLSDPVVESLAQCFSRSSSEVKARFEVLKKEEKAVEDSKNKDNEARTLNSFLDKDLEVALDSFDNLFCRRCLV FDCRLHGCSQDLIFPAEKQSPWSYPDDNITCGPQCYKSVLKSERISSGISPERGFIEENSVCQSDGAGVPITSRKKSSAPSANRRVKSCQSESASSNAKN ISESSDSEIGPRQDTSPTSQLSPSKIKLVGKGGTCKRNSKRVAERVLSCMRKRQKKMVASDTDSVASGGLLSSDMKLRSTSHKGKEDASSSSHKNLKSPT TARSRRKSEFHDGPSSEMVMDPPVPSSDDTFRKEEFIDKNTCKKELSDNRSWKAIEKSLFEKGVEIFGGNSCLIARNLLNGLKTCWEVFQYITRSENRLA CEAGDAGTLGEGYSKFDCSGTVGKNEARRRSRFLRRRGRVRRLKYSWKSTAYHSIRKRITERKDQPCRQYNPCSCQAACGKQCTCLLNGTCCEKYCGCPK SCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYT GELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPEPNCYAKVIMVAGDHRVGIFAKERINAGEELFYDYRYEPDRAPAWARKPEA SGSKKEDGGHSSGRAKKLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	0	1	Pt-CLF.1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	2.00	0.9386	CYP51.2
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	3.00	0.9349
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	3.16	0.9192
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	4.47	0.9329
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	5.65	0.9231
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	6.32	0.9356
AT5G62865			unknown protein		Potri.012G078300 [exp]	8.12	0.9110
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	10.00	0.9310	Pt-VLN4.2
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.010G251600 [exp]	10.53	0.9035	ZML1.1
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	11.74	0.9295

Compare expression of checked genes

Potri.007G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.