Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36910 301 / 5e-104 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) AT4G34120 265 / 5e-90 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 43 / 5e-05 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140800 [exp] 382 / 5e-136 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 275 / 1e-93 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 261 / 1e-88 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 40 / 0.0004 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004992 [exp] 251 / 9e-84 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10002834 [exp] 247 / 3e-82 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10041576 [exp] 214 / 9e-70 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10027885 [exp] 149 / 6e-44 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.007G046400.1 pacid=42766634 polypeptide=Potri.007G046400.1.p locus=Potri.007G046400 ID=Potri.007G046400.1.v4.1 annot-version=v4.1 ATGGACGCTTCGATTCTACTACACCCGAGTTCTCTCTTCGTCACGCGCCTACGCGCTTCCACCACAGCATCTGCTGTTTCCCTCGCTCACCAGATGCCGT GCCTTCTATTTTCTCCTCCTGGAACGAAACTTGTCTCCTTATCATCCGTTTCTTGCCCTCGCAGTTCGTCTTCCTTTGTAGCTGCTGCAAGTAGTGGCAC CTTGATGGCTAATTCTCCAAAAAGTGGGGTTTATACAGTTGGTGATTTTATGACTAGGAAAGAGGATTTGCATGTTGTAAAACCTACAACAACTGTAGAT GAAGCACTTGAGGCTCTTGTGGAACATAGAATTACTGGTTTCCCAGTGATCGATGATGACTGGAAACTGGTTGGTCTTGTGTCAGATTATGACTTGCTAG CATTGGACTCCATATCAGGTGGTGGAAGGACTGAAACTAACATGTTTCCTGAAGTTGAAAGCACGTGGAAAACTTTTAATGAGGTGCAAAGGTTGCTCAG TAAAACCAATGGGAAGGTCGTTGGTGACTTGATGACACCAGCACCAGTCGTTGTTCGCGAAACCACCAATCTTGAGGATGCTGCAAGATTATTACTTGAG ACAAAATATCGTAGACTTCCAGTTGTTGATGCTGATGGCAAGCTGGTTGGAATTATCACAAGAGGAAATGTTGTAAGAGCTGCTCTACATATAAAACATG ACATTGAAAGGAAAGCATAG
AA sequence Show only first row Show all	>Potri.007G046400.1 pacid=42766634 polypeptide=Potri.007G046400.1.p locus=Potri.007G046400 ID=Potri.007G046400.1.v4.1 annot-version=v4.1 MDASILLHPSSLFVTRLRASTTASAVSLAHQMPCLLFSPPGTKLVSLSSVSCPRSSSSFVAAASSGTLMANSPKSGVYTVGDFMTRKEDLHVVKPTTTVD EALEALVEHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRTETNMFPEVESTWKTFNEVQRLLSKTNGKVVGDLMTPAPVVVRETTNLEDAARLLLE TKYRRLPVVDADGKLVGIITRGNVVRAALHIKHDIERKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	2.23	0.9788
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Potri.013G064700 [exp]	3.16	0.9723
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	6.00	0.9692	Pt-CTF2.2
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	7.41	0.9658
AT3G15353		ATMT3, MT3	metallothionein 3 (.1.2)		Potri.001G400100 [exp]	7.74	0.9578
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.002G215100 [exp]	10.19	0.9599
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	10.90	0.9652
AT4G02725			unknown protein		Potri.005G210700 [exp]	11.48	0.9604
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	12.96	0.9661
AT1G67840		CSK	chloroplast sensor kinase (.1....		Potri.010G047500 [exp]	13.19	0.9443

Compare expression of checked genes

Potri.007G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.