Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42240 334 / 6e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G13700 177 / 9e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G21215 136 / 2e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G30260 51 / 3e-07 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT5G19350 50 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G02840 48 / 4e-06 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G76940 47 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G47580 47 / 5e-06 U1A spliceosomal protein U1A (.1) AT1G06960 42 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G035000 [exp] 184 / 2e-56 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G009400 [exp] 143 / 5e-40 AT3G21215 219 / 4e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G249700 [exp] 135 / 5e-37 AT3G21215 376 / 9e-131 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G224900 [exp] 52 / 1e-07 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.012G019300 [exp] 51 / 2e-07 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 49 / 1e-06 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G127800 [exp] 47 / 4e-06 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G070200 [exp] 47 / 9e-06 AT1G76940 215 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G153700 [exp] 45 / 4e-05 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034844 [exp] 119 / 4e-31 AT3G21215 370 / 1e-128 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033388 [exp] 109 / 3e-27 AT3G21215 337 / 2e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028598 [exp] 69 / 6e-13 AT1G76940 135 / 9e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028599 [exp] 52 / 1e-07 AT1G21320 206 / 4e-66 nucleotide binding;nucleic acid binding (.1.2) Lus10018903 [exp] 52 / 2e-07 AT1G21320 182 / 5e-54 nucleotide binding;nucleic acid binding (.1.2) Lus10020656 [exp] 45 / 4e-05 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 45 / 6e-05 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10042240 [exp] 44 / 7e-05 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 42 / 0.0002 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10000904 [exp] 42 / 0.0004 AT5G46840 305 / 9e-102 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G046600.6 pacid=42765977 polypeptide=Potri.007G046600.6.p locus=Potri.007G046600 ID=Potri.007G046600.6.v4.1 annot-version=v4.1 ATGGAGGAAAACATGGCCGCATACTACCCGCCACCACCACCACCACCACCGGGTCACTACCCAACCTACTACCAACCGCAACCTCCGCCACCAACGGTGG CACCTATTCCACCTCCACCTCCTCATCACCTCCCTTACATACCTCATCCACAACCGCCACCGGCACCTTTCGTATCCTACGTCAGTGTTCCTGCTTATGT CCCACACGATCAGGTCCGTACTCTCTTTGTTGCTGGCCTTCCTGATGACATCAAGCCCCGCGAAATGTACAATTTATTCCGCGAGTTCCCTGGCTACGAA TCTTCTCATCTCCGTACCCCCTCTCAAAATTCTCAGCCATTTGCCTTTGCTACATTCACTGACCAGCCGTCCGCGGTTGCAGCCATGCATGCTCTGAATG GGATGGTTTTCGATCTTGAAAAGGGATCTACCCTATATATTGATCTAGCAAAATCTAATTCTAGATCTAAGCGCTCAAGAACAGATGATGAATGGTCCAG TTTGGATAAAAAGGCTAGGGTTTCCTCTGGATTCTCGATGGGCACTCCTGATTCAGCAGGTTTTGGCAGCGTTCACTTGCCTGGAATGGCTAATTCTGCT TTCAACACGATTGGTTTTCCATCTGCACAAAGTCCTGGAAGCATCGATGACAGATCTAGAAATGAGTCAAAAGCAGGAAGAATGAATAATTCTTCAGCAC CTCCATGCCCAACACTTTTTGTGGCTAATCTGGGACAAAATTGTACAGAGGAGGAGCTAATTCAAGTATTCTCAAGATGCCCTGGATTTCTGAAATTGAA GATGCAGAGCACATATGGGGCTCCAGTCGCATTTGTTGATTTCCAGGATACTGCCAGCTCAACTGGGGCACTAAATCATCTGCAAGGCACCGTTCTCTAT TCATCAGTTGCTGGCGAGGGCTTGCGGTTGGAATATGCAAAATCACGCATGGGAATGCGGAGGAAACCAAGGTAA
AA sequence Show only first row Show all	>Potri.007G046600.6 pacid=42765977 polypeptide=Potri.007G046600.6.p locus=Potri.007G046600 ID=Potri.007G046600.6.v4.1 annot-version=v4.1 MEENMAAYYPPPPPPPPGHYPTYYQPQPPPPTVAPIPPPPPHHLPYIPHPQPPPAPFVSYVSVPAYVPHDQVRTLFVAGLPDDIKPREMYNLFREFPGYE SSHLRTPSQNSQPFAFATFTDQPSAVAAMHALNGMVFDLEKGSTLYIDLAKSNSRSKRSRTDDEWSSLDKKARVSSGFSMGTPDSAGFGSVHLPGMANSA FNTIGFPSAQSPGSIDDRSRNESKAGRMNNSSAPPCPTLFVANLGQNCTEEELIQVFSRCPGFLKLKMQSTYGAPVAFVDFQDTASSTGALNHLQGTVLY SSVAGEGLRLEYAKSRMGMRRKPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42240			RNA-binding (RRM/RBD/RNP motif...		Potri.007G046600 [exp]	0	1
AT5G45760			Transducin/WD40 repeat-like su...		Potri.011G069700 [exp]	2.44	0.6966
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.001G242333 [exp]	3.46	0.6940
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Potri.002G087700 [exp]	4.24	0.6165
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.001G283100 [exp]	5.47	0.6871	Pt-ALDH6.5
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	9.16	0.6865
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	10.81	0.7039
AT2G47020			Peptide chain release factor 1...		Potri.014G114000 [exp]	17.08	0.7026
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	17.94	0.6831
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	21.90	0.6274
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	23.45	0.6072

Compare expression of checked genes

Potri.007G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.