Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KICP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47820 1422 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 1264 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 561 / 1e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 251 / 3e-69 ATP binding microtubule motor family protein (.1) AT2G36200 246 / 2e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 241 / 8e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 235 / 6e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 232 / 5e-62 POK2 phragmoplast orienting kinesin 2 (.1) AT3G63480 216 / 4e-61 ATP binding microtubule motor family protein (.1.2) AT3G44050 223 / 2e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024700 [exp] 1509 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 1484 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 875 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 857 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G082900 [exp] 247 / 9e-68 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 245 / 5e-67 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 243 / 3e-66 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 241 / 7e-66 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 238 / 5e-65 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024805 [exp] 1442 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 1439 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 1414 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000762 [exp] 561 / 2e-180 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 550 / 2e-176 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018120 [exp] 248 / 5e-68 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 247 / 1e-67 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 246 / 2e-67 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 246 / 1e-66 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 244 / 2e-66 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.007G046700.3 pacid=42766532 polypeptide=Potri.007G046700.3.p locus=Potri.007G046700 ID=Potri.007G046700.3.v4.1 annot-version=v4.1 ATGGAAATGACACCGTCATCGGAGATTTGTAGTGTTAAGGTTGCGCTTCATATACGACCCCTTATTGCCGACGAGCGTCTTCAAGGCTGTAAAGATTGTG TTTCTGTTGTTCCTCGACTACCTCAGGTACAAATTGGGACACATTCATTTACATTTGATCATGTCTATGGAAATGGTGGCGCAGAGTCATCTGCCATGTT TGAACAATGTGTTGCTCCACTTGTTGATGGATTGTTCCAAGGATACAATGCCACGGTTCTTGCGTATGGTCAGACGGGATCGGGGAAAACATATACTATG GGAACTGGCTTCAAAGATGGTTGCCAGACCGGACTGATTCCTCAAGTTATGGGTGCATTATTCAACAAGATTGAAACACTGAAGCATCAAACGGAATTCC AATTGCATGTGTCCTTCATAGAGATCTTAAGGGAAGAAGTGAGAGACTTGCTGGATTCTGCATCTGAGAGTAAATCAGTGGTTGCTAATGGACACGCTGG GAAAGTTGCAGTTCCTGGGAAGTCTCCAATACAAATTCGTGAAGCATCGAATGGAGTTATAACTCTAGCAGGATCAACTGAAGTAGCTGTCAGTACATTG CAAGAAATGGCAGCGTGCTTGGAGCAAGGATCATTATGTAGGGCAACAGGAAGTACAAATATGAATAACCAGTCCAGTCGGTCGCATGCCATATTCACGA TCACATTAGAACAGATGCGCAAACTCCATTCAGTTTCTCCTGTTAATGACACTCCAGATGAGGATATGGGTGAAGAGTATTTCTGTGCAAAGCTCCATTT GGTAGATCTAGCTGGATCTGAACGAGCAAAAAGAACTGGTACTGACGGTCTTCGTTTGAAAGAAGGTATTCACATTAATAAGGGGCTTCTTGCACTTGGT AATGTCATCAGTGCTTTGGGGGATGAAAAAAAGCGAAAAGAAGGCATGCATGTTCCCTACCGAGACAGTAAACTGACCCGACTCTTACAGGATTCTCTTG GTGGAAACAGCAAAACTGTTATGATAGCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAGACTCTCAACACTCTCAAATACGCAAACCGTGCACGCAA TATTCAAAATAAGCCAGTTGCTAATAGAGATTTAATATCCAATGAGATGCAACAGATGCGCCAACAGTTAAAGTACTTGCAGGCAGAACTTTGTGCTCGC GGGGTTAGAGCTGCTTCAGATGAAGTACAGGTTCTCAGGGAAAGGATTGCTTGGCTTGAGGCTACAAATGAGGACCTTTCTCGAAAACTTCATGAATACC GGAGCCGATGTGCTATTACAGAGAAGTGTGAAATTGATGCTTATGAGGGGCATGCCACTTCTGCAAAAAGTGATGGACTTAAGAGGAACTTTCAGAGTAT GGACTCATCTGAGTATTATATGGATGAAGACATATCAGGTGATAGCTCTGGGGAAATTGATGAAGCAGCAAAAGAATGGGAGCACACACTTATACAAAGC ACAATGGATAAAGAATTAAATGAGCTGAACAAACGTTTGGAGCAAAAAGAGTCTGAGATGAAACTTTTTGGAGGGGTTGACACTGAAGTTCTGAAGCAGC AGTTCAGGAAGAAAATCTTGGAACTCGAGGAAGAGAAAAGAACTGTTCAGCAAGAGAGGGATCATTTATTGGTTGAAATTGAGAACCTTGCTGCCAATTC TGATGGACAAGCACAGAAAACACAAGATATTCACTCTCAGAAATTAAAAGCACTTGAGGCACAGATTTTAGATCTTAAAAAGAAACAAGAAAGCCACTTC GAGCTTTTGAAGCAAAAACAAAGAAGTGATGAAGCAGCGAATAGGTTGCAAGCTGAAATACAATATATCAAGGCTCAAAAGGTTCAGTTGCAACACAAGA TAAAACAAGAAGCAGAACAATTTCGACAATGGAAGGCCAGTCAAGAGAAGGAATTGCTGCAGCTAAGAAAGGAGGGCAGGAGAAATGAGCATGAGAGGCA TAAGCTTGAAGCCCTGCATCAACGTCAGAAAATGGTTCTTCAAAGGAAGACAGAGGAGGCGGCAATGGCTAGCAAAAGGCTAAAGGAGTTGTTGGAAGCC CGCAAGTCTTCACCACGTGAGAGCTCAGCTAATTCCAATGGACATTTATCGCCTGGGCAGGGCAATGAAAAATCCTTAAGAAGATGGCTTGATCACGAGC TTGAAGTCATGGTGAAAGTGCATGAAGTTCGTCTTCAACATGAGAAGCAAAAACAAGAACATGCTGCACTAGCGGAGGAGTTAGCCTTGTTGAAACAAGT GAACCAGCTCTCTCTAAATGGGGGTAGTCCACAAGAAGGAAAGAATGGACATAGACATACTAGATTGATGTTGATGTCACCAAATGCAAGAATGGCTAGA ATTGCTTTTTTGGAGAACATGCTGAGAGTATCTGCAAGTGCCCTAGCAACAATGGCTTCACAACTTTCAGAAGCAGGAGAAAGAGAGCGTACCTTTATTG GTCGTGGACATTGGAACCAAATACGCTCAATGGGAGAAGCTAAGAACCTGCTTCAGTATATGTTTACTGCAGCTGCAGATGATAGATGCCGATTGTGGGA AAAGGATATGGAAATCAAGGAAACTAAAGATGAATTGAATGATCTTTTGATCTTACTAAGACAAAGTGAGATCCAGAGGAAGGAACTTCTGAAGGAGCAA AAGATGAGAGAACAAGCTGTTGCAATTGCCTTTGCCTCATCAGCTTCGGATAGCTCACGCAGTTCTTCGAAGCATTATGCAGACGACATGAGTGGTCATT TGTCTCCAATGTTGCTTCCAGCGCCAAAGCAACTAAAATTTACACCTGGGATTGTTAATGGGCCTGCTAGAGAATCGGTGGCATTTCTAGACCAAACGGG AAAGATAGTACCAGTTGGACATTTGTCAATGAAGAAATTGGCAGCTTTAGGGCAAACTGGAAAACTCTGGCGATGGAAGAGGAGTCATCATCAGTGGCTG CTTCAGTTCAAATGGAAGTGGCAGAAACCATGGAAGCTCTCAGAGTGGATCAAACACAGTGATGAAACAATCATGAGGTCAAGGCCTCGCTCACAGGCTC TGGTTGCTATGATATGA
AA sequence Show only first row Show all	>Potri.007G046700.3 pacid=42766532 polypeptide=Potri.007G046700.3.p locus=Potri.007G046700 ID=Potri.007G046700.3.v4.1 annot-version=v4.1 MEMTPSSEICSVKVALHIRPLIADERLQGCKDCVSVVPRLPQVQIGTHSFTFDHVYGNGGAESSAMFEQCVAPLVDGLFQGYNATVLAYGQTGSGKTYTM GTGFKDGCQTGLIPQVMGALFNKIETLKHQTEFQLHVSFIEILREEVRDLLDSASESKSVVANGHAGKVAVPGKSPIQIREASNGVITLAGSTEVAVSTL QEMAACLEQGSLCRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPVNDTPDEDMGEEYFCAKLHLVDLAGSERAKRTGTDGLRLKEGIHINKGLLALG NVISALGDEKKRKEGMHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRARNIQNKPVANRDLISNEMQQMRQQLKYLQAELCAR GVRAASDEVQVLRERIAWLEATNEDLSRKLHEYRSRCAITEKCEIDAYEGHATSAKSDGLKRNFQSMDSSEYYMDEDISGDSSGEIDEAAKEWEHTLIQS TMDKELNELNKRLEQKESEMKLFGGVDTEVLKQQFRKKILELEEEKRTVQQERDHLLVEIENLAANSDGQAQKTQDIHSQKLKALEAQILDLKKKQESHF ELLKQKQRSDEAANRLQAEIQYIKAQKVQLQHKIKQEAEQFRQWKASQEKELLQLRKEGRRNEHERHKLEALHQRQKMVLQRKTEEAAMASKRLKELLEA RKSSPRESSANSNGHLSPGQGNEKSLRRWLDHELEVMVKVHEVRLQHEKQKQEHAALAEELALLKQVNQLSLNGGSPQEGKNGHRHTRLMLMSPNARMAR IAFLENMLRVSASALATMASQLSEAGERERTFIGRGHWNQIRSMGEAKNLLQYMFTAAADDRCRLWEKDMEIKETKDELNDLLILLRQSEIQRKELLKEQ KMREQAVAIAFASSASDSSRSSSKHYADDMSGHLSPMLLPAPKQLKFTPGIVNGPARESVAFLDQTGKIVPVGHLSMKKLAALGQTGKLWRWKRSHHQWL LQFKWKWQKPWKLSEWIKHSDETIMRSRPRSQALVAMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	0	1	Pt-KICP.1
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.001G055900 [exp]	2.00	0.8838
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	2.82	0.8860
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	3.16	0.8458
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	4.89	0.8328
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Potri.010G152200 [exp]	5.19	0.8622
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022300 [exp]	9.38	0.7979
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	13.00	0.8274
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	18.76	0.8474
AT1G15780			unknown protein		Potri.003G028401 [exp]	19.62	0.8282
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	24.12	0.8456

Compare expression of checked genes

Potri.007G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.