Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43020 575 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 451 / 4e-150 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 391 / 3e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 291 / 6e-89 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 290 / 2e-88 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 236 / 3e-68 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 211 / 3e-59 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 210 / 5e-59 RKL1 receptor-like kinase 1 (.1) AT3G17840 206 / 1e-57 RLK902 receptor-like kinase 902 (.1) AT5G58300 206 / 2e-57 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G141200 [exp] 997 / 0 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G024400 [exp] 440 / 6e-146 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 337 / 1e-106 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 301 / 1e-92 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 294 / 5e-90 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 233 / 7e-67 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.016G139200 [exp] 221 / 5e-63 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G117200 [exp] 220 / 2e-62 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 217 / 1e-61 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036426 [exp] 501 / 8e-170 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 496 / 7e-168 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 386 / 4e-125 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018733 [exp] 385 / 8e-125 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029075 [exp] 298 / 3e-91 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 295 / 6e-90 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 220 / 2e-62 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 219 / 2e-62 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 219 / 4e-62 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 218 / 9e-62 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G046900.3 pacid=42764921 polypeptide=Potri.007G046900.3.p locus=Potri.007G046900 ID=Potri.007G046900.3.v4.1 annot-version=v4.1 ATGAAGCAACCACAAACATCCTCCACTTCCCACTTCACAATGCCACTAAGCAACCCTCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCACCACCCTCACCA CCTCTCAGCTTGAGCAAACAACCTACCTTCCCCCACTAGACGCAGTTTCCATCCTCTCTTTCAAATCCAAAGCTGACTTAGACAACAAACTCTTCTACAC CCTCAACGAACGTTTTGACTACTGTCAATGGCAAGGCATCAAATGTGCTCAAGGCCGTGTTGTCCGTGTTGTCCTTCAAGGTTTCGGTCTGCGTGGGACT TTCCCTCCCTTCACTCTTTCCCGGCTCGACCAACTTCGTGTCCTTTCTCTCCAAAACAACTCCCTCTCCGGTCCCATTCCTGACTTGTCCCCACTCTTTA ACCTAAAATCTCTGTTTTTAAACCATAACTCTTTCTCTGCTTCTTTCCCTCCTTCCATTTTATTGCTCCATAGATTAACAATTCTTGATCTTTCGTACAA CAATCTCGCTGGACAGCTTCCCGTAAATTTATCTTCTTTGGACCGGTTAAACTCGCTCCAACTCGAGTTTAATCAGTTTAACGGGACACTCCCTTCTTTA GACCTCCGACTTCTTGTTTTCTTTAATGTTTCTGGTAATAACCTTACCGGCCCCATTCCTTTGACCCCTACATTGTCACGTTTTGACACTTCCTCTTTCT CCTTAAATCCTTTTCTTTGTGGAGAGATTATTAATAAGGCTTGCAAGCCACGGTCTCCATTTTTTGATTCTTCGGCTTCTCCTACTGCTAGTTCGCCGGC AGGAGTGCCGTTTGGACAAAGCGCTCAAGCTGGAGGTGGGGTTGTAGTATCTATAACTCCTCCTTCGAAGCAGAAGCCTAGTAGAAGTGGTGTTGTTTTG GGATTTACTGTTGGGGTTTCGGTTTTAGTACTTTCTTTGCTGTGCTTTGTTTTGGTTTTGGTCAAGAAACAGAAGCAAGAAAGACATGCTGAAGAAGAGA AAGAACAAGTGGTGACCGGGACGACTTCTCCGGTTAGGACACCTTCGAACAATCCGGCAATGCAAAGTCAAGTTGGAGAGAAGGGTCATGAGATTATAAA TACGAAGGCGAAAGAAGGGCTGGTTCAACAAGTTAGGAAAGCAGAGAAGAGTGGGAGTTTAGTGTTTTGTGGAGGGAAAACACAGGTTTATACATTAGAG CAGTTAATGAGGGCATCTGCCGAGTTGCTGGGGAGGGGTACGATTGGAACTACTTATAAAGCTGTTCTTGATAATCAATTGATTGTTACAGTGAAAAGGC TTGATGCTAGTAAGACTGCAATTACTAGTAGTGATGTGTTTGAGAGGCACATGGATGTTGTCGGTGCGCTTAGACACCCAAATTTGGTGCCAATCGCTGC TTATTTTCAAGCTAAAGGAGAAAGGCTTGTTATCTTTGATTATCAACCCAATGGCAGCCTCTTCAATCTCATTCATGGTTCAAGATCAACAAGGGCAAAG CCACTTCATTGGACATCGTGCTTGAAGATAGCAGAAGATGTGGCACAGGGTCTTGCTTACATCCATCAAACGTCAAACCTTGTCCATGGAAACCTGAAAT CCGCCAATGTTCTACTTGGAGCTGATTTTGAGGCCTGCATCACAGACTACTGCCTTGCCATGCTTGCAGACACTTCTTCTAGTGAAAATCCTGATTCTGC AGCTTGTAAAGCACCTGAGACTCGCAAGGCTAGCCGTCGAGCCACTTCCAAATCTGATGTCTATGCATTTGGTGTGCTATTACTGGAGCTTTTGACTGGT AAACATCCATCACAACATCCATACCTTGTGCCTGCTGATATGTTGGACTGGGTCAGAACAGTGAGAGATGACGGTAGTGGGGATGACAACCAGCTTGGAA TGCTTACTGAAGTTGCTAGTGTTTGTAGCTTGACCTCACCGGAACAGAGGCCGGCAATGTGGCAAGTGTTAAAGATGATACAAGAGATAAAGGACAATGT CATGGTAGAAGATAATGCAGCTGATGGATATTCATAG
AA sequence Show only first row Show all	>Potri.007G046900.3 pacid=42764921 polypeptide=Potri.007G046900.3.p locus=Potri.007G046900 ID=Potri.007G046900.3.v4.1 annot-version=v4.1 MKQPQTSSTSHFTMPLSNPLLLFFLLLLLTTLTTSQLEQTTYLPPLDAVSILSFKSKADLDNKLFYTLNERFDYCQWQGIKCAQGRVVRVVLQGFGLRGT FPPFTLSRLDQLRVLSLQNNSLSGPIPDLSPLFNLKSLFLNHNSFSASFPPSILLLHRLTILDLSYNNLAGQLPVNLSSLDRLNSLQLEFNQFNGTLPSL DLRLLVFFNVSGNNLTGPIPLTPTLSRFDTSSFSLNPFLCGEIINKACKPRSPFFDSSASPTASSPAGVPFGQSAQAGGGVVVSITPPSKQKPSRSGVVL GFTVGVSVLVLSLLCFVLVLVKKQKQERHAEEEKEQVVTGTTSPVRTPSNNPAMQSQVGEKGHEIINTKAKEGLVQQVRKAEKSGSLVFCGGKTQVYTLE QLMRASAELLGRGTIGTTYKAVLDNQLIVTVKRLDASKTAITSSDVFERHMDVVGALRHPNLVPIAAYFQAKGERLVIFDYQPNGSLFNLIHGSRSTRAK PLHWTSCLKIAEDVAQGLAYIHQTSNLVHGNLKSANVLLGADFEACITDYCLAMLADTSSSENPDSAACKAPETRKASRRATSKSDVYAFGVLLLELLTG KHPSQHPYLVPADMLDWVRTVRDDGSGDDNQLGMLTEVASVCSLTSPEQRPAMWQVLKMIQEIKDNVMVEDNAADGYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	0	1
AT1G09600			Protein kinase superfamily pro...		Potri.004G226900 [exp]	3.46	0.8035
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	4.58	0.8320
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	4.69	0.8341
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	6.55	0.8529
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.005G049800 [exp]	6.85	0.7228
AT3G08670			unknown protein		Potri.016G139500 [exp]	8.36	0.8008
AT1G22610			C2 calcium/lipid-binding plant...		Potri.013G107700 [exp]	10.48	0.7588
AT5G14230			unknown protein		Potri.001G333600 [exp]	13.49	0.7732
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	14.42	0.7971
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	17.74	0.7729

Compare expression of checked genes

Potri.007G046900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.