Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67220 604 / 0 FMN-linked oxidoreductases superfamily protein (.1) AT3G49640 124 / 6e-32 Aldolase-type TIM barrel family protein (.1.2) AT4G38890 77 / 5e-15 FMN-linked oxidoreductases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125500 [exp] 80 / 8e-16 AT4G38890 886 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Potri.009G059900 [exp] 58 / 4e-09 AT3G63510 591 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041598 [exp] 612 / 0 AT5G67220 593 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10006260 [exp] 612 / 0 AT5G67220 592 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10003486 [exp] 117 / 6e-29 AT3G49640 498 / 2e-178 Aldolase-type TIM barrel family protein (.1.2) Lus10035460 [exp] 82 / 2e-16 AT4G38890 870 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01207 [poplar] [flax] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Potri.007G047300.1 pacid=42765899 polypeptide=Potri.007G047300.1.p locus=Potri.007G047300 ID=Potri.007G047300.1.v4.1 annot-version=v4.1 ATGAAATCCAAATCCATCTTCTCTCCACAAAACCCTTGTCTTAAATCTCTCTTTTCAACACCGCTAGAGTCTCTTATGGCCACTTCTCTAGACCTAAACG ACGACTCTCCCTGCTCCAATCCCCAGCAACAACAAACAGAAACCCATGAAAATTCATCAGAAACGGCATTGCTTGGTGAGCCGAGGGGGTACCTGAGCGG AGAGGCTCGTGTGGAGCGTGCATGGGGTCATTGGAGTAAACTGGGTCGGCCCAAGTTGATAGTGGCTCCTATGGTGGATAATTCGGAGCTGCCGTTTAGA ATGCTTTGTAGGAAGTATGGAGCTGAGGCTGCTTATACTCCTATGTTGCATTCCAGGATTTTTAGTGAGAATGAGAAGTATAGAAGAGAGGAATTCACCA CTTGTAAGGAAGATCGCCCCCTATTCGTCCAATTTTGCGCCAACGATCCTGATATTTTATTGCAAGCAGCGCGGAGGGTGGAACCTTATTGTGATTATGT GGATATCAATCTAGGATGTCCTCAGCGGATTGCCAGGCGAGGTTACTACGGAGCTTTCCTGATGGATAATCTTCTACTTGTGAAATCTTTAGTTGAAAAA CTAGCTATCAATCTTAATGTCCCTGTGTCATGCAAAATCCGGGTCTTCCCCAAATTGGAAGACACAATTAATTATGCTAGAATGCTAGAGGAAGCTGGCT GCTCACTTTTAGCTGTCCATGGTAGAACAAGAGATGAGAAAGATGGAAAGAAATTTCGTGCTGACTGGAAGGCCATCAAGGCTGTAAAAAGTGCTCTCAG AATTCCAGTTCTTGCCAATGGGAACATACGGCACATGGACGATGTTAAGACCTGTTTGGAAGAGACTGGTACTGATGGTGTGCTTTCAGCTGAGACCCTT CTTGAGAATCCGGCTCTCTTTGCTGGATTTCGGACTGCAGAATGGGTAGATGATGGTGAAGAAGGCAACAAAGATGGATTGCTGGACCAGGCAGATTTGT TAGTGGAGTATTTGAAATTTTGTGAAAGGCACCCTGTGCCATGGAGGATGATCCGTTCTCATGTGCACAAGATGCTAGGAGAGTGGTTCAGAATTCATCC TCAAGTAAGAGAGGATCTGAATGCACAATCCAGATTGACCTTTGAATTTCTATATGATATGGTGAATCGACTTAGAGAGCTGGGTGTGAGGATTCCACTT TATTTGAAGGAAAAGGATAGTCATGTACAAGGAGTTCCTGAAGATGGTTTGGCCAATTGA
AA sequence Show only first row Show all	>Potri.007G047300.1 pacid=42765899 polypeptide=Potri.007G047300.1.p locus=Potri.007G047300 ID=Potri.007G047300.1.v4.1 annot-version=v4.1 MKSKSIFSPQNPCLKSLFSTPLESLMATSLDLNDDSPCSNPQQQQTETHENSSETALLGEPRGYLSGEARVERAWGHWSKLGRPKLIVAPMVDNSELPFR MLCRKYGAEAAYTPMLHSRIFSENEKYRREEFTTCKEDRPLFVQFCANDPDILLQAARRVEPYCDYVDINLGCPQRIARRGYYGAFLMDNLLLVKSLVEK LAINLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGRTRDEKDGKKFRADWKAIKAVKSALRIPVLANGNIRHMDDVKTCLEETGTDGVLSAETL LENPALFAGFRTAEWVDDGEEGNKDGLLDQADLLVEYLKFCERHPVPWRMIRSHVHKMLGEWFRIHPQVREDLNAQSRLTFEFLYDMVNRLRELGVRIPL YLKEKDSHVQGVPEDGLAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67220			FMN-linked oxidoreductases sup...		Potri.007G047300 [exp]	0	1
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	1.73	0.8128	CBL.1
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G184100 [exp]	4.24	0.8172
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	4.69	0.8157
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Potri.018G001600 [exp]	7.74	0.7850
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.014G102800 [exp]	8.66	0.7803
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.009G126200 [exp]	12.40	0.7836	Pt-GAS41.2
					Potri.001G077040 [exp]	14.14	0.8080
AT5G07900			Mitochondrial transcription te...		Potri.015G038400 [exp]	15.09	0.7860
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076700 [exp]	15.49	0.7910	Pt-CYP89.3
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Potri.005G139800 [exp]	18.16	0.7629

Compare expression of checked genes

Potri.007G047300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.