Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43060 462 / 7e-162 Granulin repeat cysteine protease family protein (.1) AT1G47128 460 / 3e-161 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT4G36880 444 / 2e-156 CP1 cysteine proteinase1 (.1) AT3G19390 433 / 9e-151 Granulin repeat cysteine protease family protein (.1) AT3G19400 412 / 1e-143 Cysteine proteinases superfamily protein (.1.2) AT4G23520 403 / 2e-140 Cysteine proteinases superfamily protein (.1) AT4G35350 374 / 6e-129 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G11310 369 / 6e-127 RD21A, RD21 Papain family cysteine protease (.1) AT1G20850 362 / 5e-124 XCP2 xylem cysteine peptidase 2 (.1) AT4G11320 362 / 6e-124 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G141600 [exp] 678 / 0 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.014G024100 [exp] 493 / 5e-174 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 483 / 5e-170 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 476 / 4e-167 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 383 / 1e-132 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G256000 [exp] 361 / 9e-124 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 360 / 1e-123 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.015G087400 [exp] 360 / 2e-123 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 352 / 5e-120 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 477 / 1e-167 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 463 / 5e-162 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 460 / 8e-161 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 455 / 8e-159 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10013204 [exp] 363 / 1e-124 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10019827 [exp] 361 / 2e-123 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10030722 [exp] 357 / 5e-122 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10026362 [exp] 343 / 6e-117 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 343 / 9e-117 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 342 / 2e-116 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.007G047600.1 pacid=42765323 polypeptide=Potri.007G047600.1.p locus=Potri.007G047600 ID=Potri.007G047600.1.v4.1 annot-version=v4.1 ATGGCACTCGCCATATCAACCCTTCTCTTCCTTTTCTTCACTGTATCATCCGCCTTGGACATGTCAATCTTTAACCATGACGACAATCACCTAAGCCATG ATCAGTCGAGCTGGAGAAGTGATGATGAGGTGATGAGTATATACAAATGGTGGCTTCAAAAGCATGGTAAAGCATACAACAGGCTAGGAGAGAAGGCAAA AAGGTTTGAAATCTTTAAGAACAATTTGAGATTCATTGATGAACATAACTCTCAAAACCGTACGTACAAAGTTGGTTTGACCAAGTTTGCTGATCTTACC AACCAAGAGTACCGTGCCATGTTCTTGGGCACGAGGAGTGACCCAAAGCGTAGATTAATGAAGTCCAAAAACCCGAGTGAAAGGTACGCTTACAAGGCTG GAGACAAGCTGCCAGAATCTGTGGATTGGAGAGGAAAAGGAGCTGTCAATCCGATCAAAGATCAAGGAAGTTGTGGTAGTTGCTGGGCTTTTTCAACAGT AGCTGCAGTGGAAGGAATAAACCAGATTGTAACAGGGGAGCTAATCTCTCTATCAGAACAGGAACTTGTAGACTGTGACAGGTTCTATAATGCAGGTTGC AATGGAGGCCTCATGGACTATGCATTCCAATTCATTATCAACAATGGTGGCCTGGACACCGAAAAGGACTATCCATATCTAGGCAATGATGATACATGTG ACAGAGACAAGATGAAAACCAAGGCTGTTAGCATTGATGGGTTTGAGGATGTTTTGCCTTTTGACGAGAAAGCATTGCAGAAGGCTGTGGCACATCAGCC AGTTAGTGTTGCCATTGAAGCCAGTGGCATGGCCTTACAATTCTACCAGTCTGGAGTGTTCACTGGTGAATGTGGGACAGCTCTAGACCATGGTGTTGTT GTTGTTGGATATGGCACGGAGAAAGGACTGGATTATTGGCTTGTTAGGAACTCATGGGGCACAGAATGGGGCGAGCATGGATACATCAAGATGCAACGTA ACGTCCGCGACACATACACTGGCAGATGTGGGATTGCAATGGAATCTTCATACCCAGTCAAGAATGGCCAGAACACTGCTAAACCTTACTTGGCTGATGA AAGCGCAGGTGAGAAGATCAGCAGTATTTGA
AA sequence Show only first row Show all	>Potri.007G047600.1 pacid=42765323 polypeptide=Potri.007G047600.1.p locus=Potri.007G047600 ID=Potri.007G047600.1.v4.1 annot-version=v4.1 MALAISTLLFLFFTVSSALDMSIFNHDDNHLSHDQSSWRSDDEVMSIYKWWLQKHGKAYNRLGEKAKRFEIFKNNLRFIDEHNSQNRTYKVGLTKFADLT NQEYRAMFLGTRSDPKRRLMKSKNPSERYAYKAGDKLPESVDWRGKGAVNPIKDQGSCGSCWAFSTVAAVEGINQIVTGELISLSEQELVDCDRFYNAGC NGGLMDYAFQFIINNGGLDTEKDYPYLGNDDTCDRDKMKTKAVSIDGFEDVLPFDEKALQKAVAHQPVSVAIEASGMALQFYQSGVFTGECGTALDHGVV VVGYGTEKGLDYWLVRNSWGTEWGEHGYIKMQRNVRDTYTGRCGIAMESSYPVKNGQNTAKPYLADESAGEKISSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	1.73	0.9592
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	3.16	0.9653	Pt-LAF6.1
AT3G46630			Protein of unknown function (D...		Potri.014G023400 [exp]	3.16	0.9629
AT5G03555			permease, cytosine/purines, ur...		Potri.006G119500 [exp]	7.07	0.9526
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.013G030833 [exp]	9.48	0.9391
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151000 [exp]	10.48	0.9238
AT5G43260			chaperone protein dnaJ-related...		Potri.003G171800 [exp]	11.22	0.9479
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.002G189450 [exp]	11.83	0.9431
AT1G71180			6-phosphogluconate dehydrogena...		Potri.001G211500 [exp]	11.91	0.9297
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.013G030900 [exp]	14.66	0.9355	PTRCAT1,AAT1.3

Compare expression of checked genes

Potri.007G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.