Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19420 703 / 0 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) AT3G50110 670 / 0 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT5G39400 165 / 2e-45 ATPTEN1 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) AT5G07740 50 / 5e-06 actin binding (.1) AT2G25050 47 / 3e-05 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT1G31810 45 / 0.0001 AFH14 Formin Homology 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302000 [exp] 752 / 0 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.009G098000 [exp] 713 / 0 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.017G089700 [exp] 167 / 1e-45 AT5G39400 555 / 0.0 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) Potri.012G067900 [exp] 56 / 6e-08 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 52 / 9e-07 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 46 / 8e-05 AT5G58160 598 / 0.0 actin binding (.1) Potri.018G108000 [exp] 46 / 0.0001 AT5G58160 600 / 0.0 actin binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027876 [exp] 672 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10002826 [exp] 657 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010265 [exp] 570 / 0 AT3G19420 555 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010266 [exp] 140 / 3e-38 AT3G50110 149 / 5e-42 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) Lus10035830 [exp] 47 / 5e-05 AT5G58160 619 / 0.0 actin binding (.1) Lus10003482 [exp] 46 / 9e-05 AT5G07740 714 / 0.0 actin binding (.1) Lus10036612 [exp] 46 / 0.0001 AT5G58160 608 / 0.0 actin binding (.1) Lus10003956 [exp] 45 / 0.0002 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10015724 [exp] 44 / 0.0003 AT5G07740 723 / 0.0 actin binding (.1) Lus10023804 [exp] 44 / 0.0005 AT1G31810 615 / 0.0 Formin Homology 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.007G047900.2 pacid=42766070 polypeptide=Potri.007G047900.2.p locus=Potri.007G047900 ID=Potri.007G047900.2.v4.1 annot-version=v4.1 ATGGATCCTGACCCATCTACTCAACCTCCTGTTATTGAATCTTCTAACAAAGACTCTCGTAATCTTGAACAACATTCTATGGCTGCGGCCACCCGAAATC ATAGTTCGAGTTCGAATTTGGAGACTGAAGGTTTTGGAATTTCTGCATTTTCTCGTTTTACCAGTGGCTTTGGATCGCTGCTTCCTAATACCGAGGAGAG TAGTCAAGGCAACGCAACATCTACGCAAAGTGGTGTTTTTGAATCATTCACTAAAGGTTTGGTTGATTCGTCTCGAAATGCTGTGAAGGCCATGCAGGTC AAGGCGCGCCATGTTGTTTCTCAAAATAAACGGAGATACCAGGAGGGAGGATTCGATTTGGATATGGCTTATATCACTGAGAACATAATTGCTATGGGTT TTCCTGCTGGTGATATAAGCTCTGGACTTTTTGGATTCTTTGAGGGATTCTATCGAAATCACATGGAAGAAGTGATAAAGTTTTTTGAGACCCATCATAA GGGAAAGTACAAGGTATACAATCTTTGTTCAGAGAGATTGTATGATGCATCACGATTTGGAGGAAAGGTAGCGTGCTTCCCATTTGATGACCATAATTGC CCTCCTCTTCAACTAATAACATCATTTTGTCAAAGTGCATACTCCTGGTTGAAAGAAGACATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGAATGG GCAGGACAGGTTTAATGATATGTAGCCTTCTCCTTTTCCTTAAGTTCTTCCCAACTGCTGAGGAGGCCATCGATTACTTCAACCAGAAAAGATGTGTGGA TGGGAAGGCTCTTGTTCTTCCAAGTCAGATTAGGTATGTCAAATACTTCGAGCGGATCTTAACATATTTCAATGGGGAAAATCAGCCCGAACGAAGGTGC ATGCTTAGGGGATTCCGGCTTCACCAATGTCCGTATTGGATAAGGCCCTCTATTACTATCTCTAACAACAGTGGGATTCTGTTCTCAACCAGAAACCATC CAAAAACCAAGGATTTAATGCCAGAAGATTTCTGGATCCGTGCACCTAAGAAAAAGATGGTAGTTTTTGCTCTACCAATGGAGCTAGGTCTAACAGAGCT GGCCGGGGACTTTAAGATCCATTTTCATGATCGCCAAGGAGATTTCTACTGTTGGTTAAATACTACGATGACAGAGAATAGAAAAATTTTAAATGGCTCT GATCTTGATGGTTTTGACAAGAGAAAACTGCCTTCTCCAGGTTTCCAGGTTGAAGTTGTGATGATAGACTATGATGGAACTTTACCTGCAAGGTCTGAAG TTGATTCGGCCTGCAAGGGATCTGATGTTACTAGCTCAGGTCATGTTGCAGCCACAGATGGTGGAGTTGCAGGCCATTCCAACAGAAGTGACATAGCTGA GAATGATGATGTATTCTCAGACAGTGAGGGAGAGGAAACTGGGGTTTCAAAGAGCAGGCAAGCTCAAGCTGCTTCTGGAATTGGACTTGCTCATCCCGAT CATGCATCTAACACCACAACAGAACAAATGAGGAACTTAACACAAGGAGCTGAGCAACTGTCACTCAGAAGTCATGAACCTTCACAGATAAATGCTTCTA AGGAACCAACTGCTGGCGGGGCTGGGAACCCTGCCCCTGGCACCGAGATCCGTCACCTGGACTCTGGAGGAGCCAGTGACATCAAAGCAATTGCTGCTGA TGCATCTGTTTTCACTTTCGGAGATGAAGACTATGAAAGTGAGTGA
AA sequence Show only first row Show all	>Potri.007G047900.2 pacid=42766070 polypeptide=Potri.007G047900.2.p locus=Potri.007G047900 ID=Potri.007G047900.2.v4.1 annot-version=v4.1 MDPDPSTQPPVIESSNKDSRNLEQHSMAAATRNHSSSSNLETEGFGISAFSRFTSGFGSLLPNTEESSQGNATSTQSGVFESFTKGLVDSSRNAVKAMQV KARHVVSQNKRRYQEGGFDLDMAYITENIIAMGFPAGDISSGLFGFFEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASRFGGKVACFPFDDHNC PPLQLITSFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERILTYFNGENQPERRC MLRGFRLHQCPYWIRPSITISNNSGILFSTRNHPKTKDLMPEDFWIRAPKKKMVVFALPMELGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKILNGS DLDGFDKRKLPSPGFQVEVVMIDYDGTLPARSEVDSACKGSDVTSSGHVAATDGGVAGHSNRSDIAENDDVFSDSEGEETGVSKSRQAQAASGIGLAHPD HASNTTTEQMRNLTQGAEQLSLRSHEPSQINASKEPTAGGAGNPAPGTEIRHLDSGGASDIKAIAADASVFTFGDEDYESE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	0	1
AT3G49720			unknown protein		Potri.001G288200 [exp]	2.44	0.9247
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	3.00	0.9291
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	3.46	0.9178	Pt-TTN1.1
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.018G034100 [exp]	4.47	0.9136	Pt-CYC3.1
AT3G09410			Pectinacetylesterase family pr...		Potri.006G084900 [exp]	4.47	0.9066
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.015G113200 [exp]	4.58	0.9177
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.010G251600 [exp]	4.69	0.9120	ZML1.1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	5.65	0.9231	Pt-CLF.1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	7.93	0.8862	VLN1.1
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.001G090500 [exp]	8.36	0.9101

Compare expression of checked genes

Potri.007G047900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.