Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67240 401 / 8e-132 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50100 377 / 2e-127 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 323 / 2e-105 SDN2 small RNA degrading nuclease 2 (.1.2) AT3G50090 246 / 3e-77 Exonuclease family protein (.1) AT5G25800 129 / 7e-32 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G15080 79 / 2e-16 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G48100 68 / 4e-12 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT5G40310 60 / 2e-09 C2H2ZnF Exonuclease family protein (.1) AT3G27970 55 / 6e-08 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186600 [exp] 124 / 3e-30 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G373500 [exp] 76 / 4e-15 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G073300 [exp] 57 / 2e-08 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.002G215700 [exp] 56 / 3e-08 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011504 [exp] 548 / 0 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10019321 [exp] 528 / 0 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 474 / 7e-165 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10019320 [exp] 317 / 1e-104 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 126 / 6e-31 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 126 / 7e-31 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042779 [exp] 124 / 6e-30 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029748 [exp] 117 / 9e-28 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010220 [exp] 101 / 8e-25 AT5G67240 54 / 5e-09 small RNA degrading nuclease 3 (.1.2) Lus10011026 [exp] 72 / 9e-14 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G048000.1 pacid=42765826 polypeptide=Potri.007G048000.1.p locus=Potri.007G048000 ID=Potri.007G048000.1.v4.1 annot-version=v4.1 ATGGACAAAAACCTCCTCGCCAACAGAGTAGCCGCCGCTTCGGATAAGGTGCTTGCTGAAGTGGTGAAGTTAACTCAAAAGCAAGGAAGGAGAGGTAGTC AAGGAAGCTGGAAGCAGTTTTTAAATGTTTATGAGAGGAAGTTTGGGTCTGGCTTTAGTGATCCGGCGAGAAAGTCACGCGATTCACTCGTTGCGTTTCT TCAAACTTTTACTGATGAGGATGGCTTGAAGTTTGTTGATAATGTGCTTCGGTCGCTTTCGAATTGTGAGATGTTGAAAGAAACTATGAAAGAATCTCTG GAAAATGAATCACCTGAACAGAGGCTGGTTCGTTCAACTCTTGAACATCCACTTTACCTGTCAAAGTATGCACTTCCATCGTATGAGAAGGGATGGGCAG TAACGAAGGTCCGGAAAAAGCCCAAGCTGCTAAGATGTAATAAAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTAAGGATGGTACCGATGCTTTAGT GAGGGTGTGTGTGGTGGATGCGGATTTAAAGGTAAAACTTGATGAATTAGTGAATCCATGCAAACCAGTTGAAGATTATAGAACTGAGATTACTGGAGTT ACTGCTGAAGTTTTGGATGGAGCGTCTTGTTCAGTTGCAGATATACAGATATCCATGAAGAAGTTATTATCGAGGGGAACTATTTTAGTGGGCCATAGTT TATATAATGACCTAGAAGCACTAAAGTTAGACCATGCAAGAGTGATTGATACGTCATTTATTTTCAAAAGTTCAGATGGACGTTCACCTTCCTTAAATAA TTTGTGTAAGTCTGTGCTGGGCTATGAACTTCGCAAAGCAGGTGATCCACACAACTGCTTAGATGATGCATGTGCTGCAATGAAACTTGTTCTTGCTAAG ATCGAGCGTGGAGTTGATAATTACATTCCATTGATTCAACCAGATGTGAAAGATGCAAGTTACAATGTTCCAGAAATAGAAATGGCAAAGCTACTTCTCC ACAAAATACCGGTTACTGTCCCCCGAGAAAAATTACGTAGACTGTTCCCTGCAAACTATACAATTGAAATCAAGACACATAAGGTGATTCAGGGAGTGGG ATATTCTGTGCTTGCCATCTTTAAGAATCCAGAAGAGGCATGCCAAGCATTTGAAAATTTGATTGGCAGCCTAGAAAAGGACACGTCTGGCCGACCACAG AAACTAGTAGCACTTCAACTTGACACAGGAGGATCTGCTGGCATACGGGTTCGCAAAATGACACATGATAGCCATGTTTCACAGAAAAAGAGATCTTTTG AGGGTGAGGATTCAGGGGATCCCAAGAAACCGAAGATAGACCAATGTGAGGATCACGTGAAAGAGATTGAAAGATTGAAGCAAGAACTGAAGAAACAGGA GTTAAATCAGTGTGATGACCACTTGAAAGAGATTGAAAGACTGAAGCAAGAAATAAAAACAAAAGATTTTGAAATCACCGCCCAGGATAAGATCATAACC GAACTGAAAAGGAAATTGGAAGAAATGAAAAAGAAAAAGAAGGAACGCTAA
AA sequence Show only first row Show all	>Potri.007G048000.1 pacid=42765826 polypeptide=Potri.007G048000.1.p locus=Potri.007G048000 ID=Potri.007G048000.1.v4.1 annot-version=v4.1 MDKNLLANRVAAASDKVLAEVVKLTQKQGRRGSQGSWKQFLNVYERKFGSGFSDPARKSRDSLVAFLQTFTDEDGLKFVDNVLRSLSNCEMLKETMKESL ENESPEQRLVRSTLEHPLYLSKYALPSYEKGWAVTKVRKKPKLLRCNKMLAVDCEMVLCKDGTDALVRVCVVDADLKVKLDELVNPCKPVEDYRTEITGV TAEVLDGASCSVADIQISMKKLLSRGTILVGHSLYNDLEALKLDHARVIDTSFIFKSSDGRSPSLNNLCKSVLGYELRKAGDPHNCLDDACAAMKLVLAK IERGVDNYIPLIQPDVKDASYNVPEIEMAKLLLHKIPVTVPREKLRRLFPANYTIEIKTHKVIQGVGYSVLAIFKNPEEACQAFENLIGSLEKDTSGRPQ KLVALQLDTGGSAGIRVRKMTHDSHVSQKKRSFEGEDSGDPKKPKIDQCEDHVKEIERLKQELKKQELNQCDDHLKEIERLKQEIKTKDFEITAQDKIIT ELKRKLEEMKKKKKER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	0	1
AT3G03920			H/ACA ribonucleoprotein comple...		Potri.019G034900 [exp]	1.00	0.8509
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	3.00	0.8271
AT1G76010			Alba DNA/RNA-binding protein (...		Potri.002G017600 [exp]	4.69	0.7976
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	8.71	0.8153
AT1G25260			Ribosomal protein L10 family p...		Potri.011G156300 [exp]	9.16	0.8298
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	10.19	0.7907
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	11.66	0.7818
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049500 [exp]	12.24	0.7821
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	13.26	0.7749
AT3G53440			Homeodomain-like superfamily p...		Potri.018G000700 [exp]	13.56	0.6835

Compare expression of checked genes

Potri.007G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.