Plant FIBer expression Database

Potri.007G048501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28780 122 / 3e-31 PIF1 helicase (.1)
AT3G51700 107 / 1e-25 PIF1 helicase (.1)
AT3G51690 103 / 3e-24 PIF1 helicase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G203701
[exp]
717 / 0 AT5G28780 70 / 5e-13 PIF1 helicase (.1)
Potri.009G002650
[exp]
547 / 0 AT5G28780 154 / 1e-40 PIF1 helicase (.1)
Potri.011G042150
[exp]
376 / 5e-119 AT5G28780 174 / 1e-47 PIF1 helicase (.1)
Potri.003G004501
[exp]
336 / 9e-114 AT5G28780 162 / 5e-48 PIF1 helicase (.1)
Potri.001G185950
[exp]
348 / 2e-107 AT5G28780 213 / 3e-61 PIF1 helicase (.1)
Potri.012G032376
[exp]
328 / 1e-101 ND /
Potri.013G071501
[exp]
313 / 8e-96 AT5G28780 127 / 1e-31 PIF1 helicase (.1)
Potri.001G165240
[exp]
256 / 3e-75 AT5G28780 171 / 1e-46 PIF1 helicase (.1)
Potri.006G157501
[exp]
226 / 5e-67 AT5G28780 196 / 2e-57 PIF1 helicase (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02689 Herpes_Helicase Helicase
CL0023 P-loop_NTPase PF05970 PIF1 PIF1-like helicase
Representative CDS sequence
>Potri.007G048501.1 pacid=42766501 polypeptide=Potri.007G048501.1.p locus=Potri.007G048501 ID=Potri.007G048501.1.v4.1 annot-version=v4.1
ATGACTGCTGCAACATCTCCTCAAATTAGGAATCTCTTTGTCAGCGTTATTCTTTTCTGTGATCGCTCAATGTATGATGATATTATCACCCGTTTCAAAT
CCAGCTTTGCCATGTCTAATCTTAAATTATTCCATGACGAGCTTAAAAACTATGTTCTATATGAGCTTGAGCTTCTCTTCAATGTTGCTGGCACATCTCT
TGAAAAACACAAGCTTCCAATGCATGATGGGCGTTTATTGTCAAAAATAAAGAGTAAACTTTTGAGAGAAGAACTTAACTACGATATTGCAGATCTTATA
TATCAATATTCATCAACTTTCCCACAACTCAATCAATGTCAACTAAATGTTTATGATTGTGTTGTTAAATCTGTCTTTGAAAAAAGACAAGAATTAATTT
TTGTTCATGGCCATGGAGGAATTGGGAAAACATTTTTGTGGCATACAATAATTAATCGGTTGAGATCAGATGCTCATTCAAGATTTAAGATCCCCTTTAC
TATTTCTGATACTTCATTGTGCGAGATTAAAAAAAAAACCGATCTTGCACGACTTCTAGAAATGACCTCTCTAATTGTATGGGATGAGGCTCCAATGAAT
AATCGGTGTTGCTTTGAAGCATTGGACCGTTCGCTTCTTGATGTCCTAACAAATGGTAACGACTTGCCCAATGATAAACCATTCGGTGGGAAATCAATTT
TGTTAGGAGGAGATTTCAGACAAATTTTACCTATTATTCCTGGAGGAATAAAGGAAGACATTGTTCATGCATCTCTATGCAGCTCTGTTTTGTGGTCTAA
ATTTAAAGTTCTCACTCTTACAAAGAACATGAGGCTATCGTCCAATGGACTTTCAAATGATCAAAAGAAAGAACTTGCTATTTTTGCCAACTGGATTCTT
GCAATTGCAGTGTATCCCTCTATTCGTGATATCAATATTGATCCATGCTATTTTAGAGATAGAGCAATTGTAACTCCAAGAAATGCTACAGTTTCTAAAA
TCAACAATTTTATCTTACACATACTTATTGTTACGCAACTTGCTGAGAGGGTCATAGAAGCTCAAATAATAATAGGCTCTTTTATTGGCAATCGTGTATT
TATTCCCAGGATTGTTTTTCCAATAAATGATGCAAAATGTCCATTCACAATTAAACGAAGACAATTTCCTATAAGACCGTGTTATGCTATGACAATAAAT
AAAAGTCAAGGACAATCGTTTAAAGTTGTTGGGGTTTTTCTCAAGGATCAAGTTTTCACTCATGGACAATTGTATGTTGCTCTTTCACGGGTTACATCAA
GACAAGGACTAAAGATTATCACATGCGATGCTGAAGGAAATCATTCAATCTATGCGAAAAACATTGTGTATAAAGATGTTCTTAGCTCTCTATCAGTGTC
TTGA
AA sequence
>Potri.007G048501.1 pacid=42766501 polypeptide=Potri.007G048501.1.p locus=Potri.007G048501 ID=Potri.007G048501.1.v4.1 annot-version=v4.1
MTAATSPQIRNLFVSVILFCDRSMYDDIITRFKSSFAMSNLKLFHDELKNYVLYELELLFNVAGTSLEKHKLPMHDGRLLSKIKSKLLREELNYDIADLI
YQYSSTFPQLNQCQLNVYDCVVKSVFEKRQELIFVHGHGGIGKTFLWHTIINRLRSDAHSRFKIPFTISDTSLCEIKKKTDLARLLEMTSLIVWDEAPMN
NRCCFEALDRSLLDVLTNGNDLPNDKPFGGKSILLGGDFRQILPIIPGGIKEDIVHASLCSSVLWSKFKVLTLTKNMRLSSNGLSNDQKKELAIFANWIL
AIAVYPSIRDINIDPCYFRDRAIVTPRNATVSKINNFILHILIVTQLAERVIEAQIIIGSFIGNRVFIPRIVFPINDAKCPFTIKRRQFPIRPCYAMTIN
KSQGQSFKVVGVFLKDQVFTHGQLYVALSRVTSRQGLKIITCDAEGNHSIYAKNIVYKDVLSSLSVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28780 PIF1 helicase (.1) Potri.007G048501
[exp]
0 1
AT1G18520 TET11 tetraspanin11 (.1) Potri.015G055700
[exp]
1.00 0.9891
AT1G29740 Leucine-rich repeat transmembr... Potri.011G073041
[exp]
1.41 0.9390
AT1G78720 SecY protein transport family ... Potri.011G114200
[exp]
9.74 0.8283
AT5G58200 Calcineurin-like metallo-phosp... Potri.018G111500
[exp]
11.53 0.8283
Potri.001G174350
[exp]
13.85 0.8063
Potri.012G136500
[exp]
23.23 0.7565
Potri.002G000452
[exp]
26.92 0.7502
AT5G26330 Cupredoxin superfamily protein... Potri.004G171100
[exp]
40.92 0.6830
AT2G04039 unknown protein Potri.002G217400
[exp]
41.37 0.7918
AT5G05800 unknown protein Potri.018G075600
[exp]
71.23 0.6714

Potri.007G048501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.