Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67270 437 / 5e-155 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) AT3G47690 323 / 7e-111 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1) AT5G62500 317 / 2e-108 ATEB1B end binding protein 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142200 [exp] 634 / 0 AT5G67270 442 / 5e-157 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Potri.015G062900 [exp] 333 / 8e-115 AT5G62500 421 / 3e-150 end binding protein 1B (.1) Potri.012G069400 [exp] 331 / 8e-114 AT3G47690 422 / 6e-151 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019316 [exp] 429 / 7e-152 AT5G67270 402 / 4e-141 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Lus10011508 [exp] 422 / 7e-149 AT5G67270 400 / 1e-140 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Lus10023606 [exp] 321 / 5e-110 AT5G62500 397 / 6e-141 end binding protein 1B (.1) Lus10024235 [exp] 310 / 3e-105 AT5G62500 388 / 1e-136 end binding protein 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain CL0188 [poplar] [flax] PF03271 [poplar] [flax] EB1 EB1-like C-terminal motif
Representative CDS sequence Show only first row Show all	>Potri.007G048700.3 pacid=42764872 polypeptide=Potri.007G048700.3.p locus=Potri.007G048700 ID=Potri.007G048700.3.v4.1 annot-version=v4.1 ATGGCAACTAATATCGGCATGATGGATTCGGCTTATTTCGTCGGCAGATCTGAGATTCTCTCTTGGATTAACTCCACTCTTCAGCTCAATCTCTCCAAAG TCGAAGAAGCATGCTCTGGTGCGGTGCATTGTCAGTTAATGGATTCGGTTCATCCAGGAATGGTGCCAATGCACAAGGTCAATTTCGACGCCAAAAATGA GTACGAAATGATTCAAAATTATAAGGTTCTGCAAGATGTGTTTAACAAGCTTAAGATCACTAAGCATATAGAGGTGAGTAAGCTGGTGAAAGGCAGGCCG CTCGATAACCTGGAGTTTATGCAGTGGATGAAGCGTTATTGTGATTCTGTCAATGGAGGACTTGTCAATTACAATCCAATGGAAAGGAGAGAGGCTTGCA AGGGAGGAAAAGAAACAAGCAAGAAATGTCTACAGTCTCAAGCTTCAAGCAAGGGCTCTACAACTGCTCCCAAAGTTCAGTCTTCTCACAATACTCGAAG GAACGATGTGTCCTCGGCACACTCTTCAAATCAATCTGTGAAGGCTTCTAAACCTCCTTGTCCAGTGCCTGCATATGATGCAGAGGTCACCGAGTTGAAG TTGTCAGTGGATAGCCTTGAGAAGGAGAGGGACTTCTATTTTGCAAAGCTGAGAGATATCGAGATTTTGTGCCAGAGCCCTGGGATTGAAAACCTACCAG TTGTTGCAGCAATGAAGAGAATCCTTTATTCTACTGACGATGATGCATCAGTATTAGCAGAAGCTCAAGCCATGGTGTCGCTTCACCAGAAGGAAGCAGA GCACTTGGGTCCCATTGCTGAGAAATCAACAGACGAAAAGGAGAATTCAGATCCTCAGAAGAGAAAGAACATTGTGAATCTTGATGTTGATGCTGTAGGC ATCTCAACATTGTCACCGAGGCAAAGGCTTTCTGATGCAACAGATGTCCATTGCAGCGGGTCACCTCTCATGACCTACTGA
AA sequence Show only first row Show all	>Potri.007G048700.3 pacid=42764872 polypeptide=Potri.007G048700.3.p locus=Potri.007G048700 ID=Potri.007G048700.3.v4.1 annot-version=v4.1 MATNIGMMDSAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGMVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRP LDNLEFMQWMKRYCDSVNGGLVNYNPMERREACKGGKETSKKCLQSQASSKGSTTAPKVQSSHNTRRNDVSSAHSSNQSVKASKPPCPVPAYDAEVTELK LSVDSLEKERDFYFAKLRDIEILCQSPGIENLPVVAAMKRILYSTDDDASVLAEAQAMVSLHQKEAEHLGPIAEKSTDEKENSDPQKRKNIVNLDVDAVG ISTLSPRQRLSDATDVHCSGSPLMTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.007G048700 [exp]	0	1
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.006G113200 [exp]	1.73	0.9592
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	3.46	0.9636
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	4.24	0.9619
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	7.48	0.9550	Pt-SYP111.1
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Potri.012G075000 [exp]	10.48	0.8606	APC8.2
AT5G62550			unknown protein		Potri.015G063700 [exp]	10.58	0.9406
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.017G081000 [exp]	11.18	0.9496
AT3G54560		HTA11	histone H2A 11 (.1)		Potri.002G046400 [exp]	12.40	0.9301
AT4G15830			ARM repeat superfamily protein...		Potri.008G221700 [exp]	13.41	0.9447
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.016G050300 [exp]	18.97	0.9187

Compare expression of checked genes

Potri.007G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.