Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23300 706 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 697 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 509 / 3e-170 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 502 / 1e-167 RLK receptor-like kinase (.1) AT2G15300 496 / 2e-165 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 265 / 1e-77 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 236 / 4e-67 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 219 / 4e-61 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 212 / 6e-59 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 189 / 5e-51 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142300 [exp] 1045 / 0 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 640 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 316 / 8e-96 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 266 / 3e-78 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 266 / 4e-78 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 235 / 7e-67 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 226 / 8e-64 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 220 / 1e-61 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 175 / 4e-46 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011509 [exp] 699 / 0 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 691 / 0 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 549 / 0 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 537 / 0 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014098 [exp] 341 / 3e-105 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 285 / 3e-90 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10043480 [exp] 294 / 7e-89 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 286 / 1e-85 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 218 / 6e-61 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 214 / 2e-59 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G048800.1 pacid=42766349 polypeptide=Potri.007G048800.1.p locus=Potri.007G048800 ID=Potri.007G048800.1.v4.1 annot-version=v4.1 ATGAGCTTCGAAAGTGTTCAGCTCCATTTACGGTGGAGAATTCTTGCACTTGGACTCTTACTTCTTGGAGTTCAATCTTTTGGGCTCAGCACAGATGGTG TTCTCTTGCTTTCTTTCAAGTACTCTATCCTTAGCGACCCTCTCTCTGTGCTTCAAAGCTGGAACAACCGTGACCAGACTCCATGTTCATGGAATGGAGT TACCTGTGGATCTTCTGGAACAGACAATACTTACTCTCGTGTCACCGGCTTATCTCTCTCAAATTGTCAGCTTCTTGGTTCAATTCCAGCCAATCTTGGC GTGATTCAACACCTCCAAAACCTTGATCTATCCAACAATTCTCTTAACGGGTCCTTGCCTTTTTCACTTCTCAATGCAACCCAACTCCGGTTTCTTGATC TGTCCAGTAATATGATCTCCGGTTACTTACCAGAGACCATAGGACGGTTACAGAATCTTGAACTTCTTAACCTCTCTGACAATGACTTAGCGGGGACTTT ACCTGCCAACCTCACTGCTCTCCATAATCTAACTTTTGTTTCTTTAAAGAACAATAATTTCACTGGTAATCTTCCTAGTGGATTTCAAACCGTTCAGGTT TTAGATCTCTCTTCAAATCTTCTCAATGGGTCTCTACCTCGTGATTTTGGTGGTAACAATCTTCGCTACTTGAACATCTCTTACAACAAGCTTTCTGGTC CAATTCCACAAGAGTTTGCTAATGAAATCCCATCTAACACTACCATTGATCTGTCATTCAACAATCTGACAGGAGAAATCCCGGAATCTAGTCTTTTCTT AAATCAACAAACCAGTGCTTTAGCCGGAAATCCTGATCTTTGCGGCCAGCCAACAAGAACTCCGTGTGCAATTCCTTCTTCAGTAACTACACTTCCAAAT ATATCTGCACCTGCATCACCTTCTGCAATTGCTGCAATTCCAAAAATTATAGGCTCCAGTCCTGCAACTACTCCTCCAGGTGATACAGCAACAGGGTCTG GACAAGATGAAGGTGGGCTTAGGCCAGGAACCATTATAGGGATCGTAATTGGTGACGTTGCCGGAGTTGCTATTCTTGGTATGGTTTTCTTCTACGTATA CCACTATTTAAAGAAAAGACGGAACGTTGAAGCAAATATCGAGAAGGAAGCCACCACTGCAAAGGATAGTTGGTCACCTTCATCTTCAGAGTCAAGAGGG TTCACAAGATGGGCATGTTTACGCAAAAGAGGAGAAAATGAAGAGGATTCTGAGTCTACAAGCACTGGCAACGAAGCAGACATTCTCGATCAAAGTCAAA GGAAGACAGGCTATCATGAGCAAAACAGAGAAGGGACATTGGTGACTGTAGATGGTGAGAAAGAGCTTGAGATTGAAACTCTACTTAAAGCATCAGCTTA CATATTAGGTGCTACTGGTTCTAGTATAATGTACAAGGCAGTTCTTGAAGATGGGACCTCATTCGCAGTTCGAAGAATCGGTGAAAACCATGTAGAGAGG TTCAGAGATTTCGAGACCCAAGTCCGTGCCATAGCCAAGTTGGTTCATCCAAATCTTGTTCGAATTCGTGGATTCTACTGGGGCGTTGATGAGAAGCTCA TTATCTACGATTTCGTCCCCAATGGTTGCCTTGCCAATGCTCGTTACAGGAAAGCAGGCTCGTCACCATGTCATCTACCATGGGAATCCCGGCTAAGGAT TGCTAAAGGAATGGCCCGTGGGCTGTCATTTCTCCACGATAAGAAGCATGTGCATGGAAATCTGAAGCCTAGTAATATACTCTTGGGTTCTGACATGGAG CCTCGGATCGGAGACTTTGGGCTCGAAAGGCTTGTGACCGGCGATACAAGCTCTAAAGCTGGAGAATCGGCTCGAAATTTTGGGAGCAAGAGGTCGACTG CATCGCGCGATAGCTTTCAAGATTTCGGAACAGGTCCTAGCCCAAGCCCGAGTCCAAGCTCGATCGGAGGTCTATCGCCTTATCATGCTCCGGAGTCGCT CCGGAGCCTCAAGCCCAGTCCGAAGTGGGACGTGTACTCCTTCGGGGTGATCTTGCTTGAGCTGCTGACAGGGAAGGCTGTGGTTGTTGATGAGTTGGGC CAGGGAAGTAATGGGCTAGTAGTTGAAGACAAGAACCGGGCTTTGAGGATGGCTGATGTGGCGATACGAGCAGACGTGGAGGGTAAAGAGGATGCCTTGT TGGCTTGCTTCAAGCTAGGGTATAGCTGTGCTTCTCCTCTGCCGCAGAAGAGGCCGACGATGAAAGAAGCCTTACAAGTGATTGAAAAATTCCCCTCTTC TTCTGCATCATATCCTTATGGTCAATGA
AA sequence Show only first row Show all	>Potri.007G048800.1 pacid=42766349 polypeptide=Potri.007G048800.1.p locus=Potri.007G048800 ID=Potri.007G048800.1.v4.1 annot-version=v4.1 MSFESVQLHLRWRILALGLLLLGVQSFGLSTDGVLLLSFKYSILSDPLSVLQSWNNRDQTPCSWNGVTCGSSGTDNTYSRVTGLSLSNCQLLGSIPANLG VIQHLQNLDLSNNSLNGSLPFSLLNATQLRFLDLSSNMISGYLPETIGRLQNLELLNLSDNDLAGTLPANLTALHNLTFVSLKNNNFTGNLPSGFQTVQV LDLSSNLLNGSLPRDFGGNNLRYLNISYNKLSGPIPQEFANEIPSNTTIDLSFNNLTGEIPESSLFLNQQTSALAGNPDLCGQPTRTPCAIPSSVTTLPN ISAPASPSAIAAIPKIIGSSPATTPPGDTATGSGQDEGGLRPGTIIGIVIGDVAGVAILGMVFFYVYHYLKKRRNVEANIEKEATTAKDSWSPSSSESRG FTRWACLRKRGENEEDSESTSTGNEADILDQSQRKTGYHEQNREGTLVTVDGEKELEIETLLKASAYILGATGSSIMYKAVLEDGTSFAVRRIGENHVER FRDFETQVRAIAKLVHPNLVRIRGFYWGVDEKLIIYDFVPNGCLANARYRKAGSSPCHLPWESRLRIAKGMARGLSFLHDKKHVHGNLKPSNILLGSDME PRIGDFGLERLVTGDTSSKAGESARNFGSKRSTASRDSFQDFGTGPSPSPSPSSIGGLSPYHAPESLRSLKPSPKWDVYSFGVILLELLTGKAVVVDELG QGSNGLVVEDKNRALRMADVAIRADVEGKEDALLACFKLGYSCASPLPQKRPTMKEALQVIEKFPSSSASYPYGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	0	1
					Potri.016G037200 [exp]	2.44	0.6845
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.010G057100 [exp]	9.16	0.6802
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.003G121800 [exp]	9.48	0.6537
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	10.95	0.6665
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	12.80	0.6866
AT2G40270			Protein kinase family protein ...		Potri.010G185300 [exp]	13.56	0.6571
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	16.24	0.6522
AT3G48540			Cytidine/deoxycytidylate deami...		Potri.012G097800 [exp]	17.08	0.7014
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	17.66	0.6516
AT5G36930			Disease resistance protein (TI...		Potri.005G004500 [exp]	19.49	0.6116

Compare expression of checked genes

Potri.007G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.