Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37270 1104 / 0 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT4G30110 187 / 5e-49 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT5G21930 178 / 4e-46 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT2G19110 172 / 6e-44 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G33520 171 / 1e-43 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G44790 152 / 1e-37 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 152 / 1e-37 HMA5 heavy metal atpase 5 (.1) AT4G30120 110 / 4e-25 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT1G07670 59 / 1e-08 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 59 / 2e-08 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076900 [exp] 200 / 7e-53 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Potri.001G205400 [exp] 174 / 1e-44 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 172 / 5e-44 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 168 / 8e-43 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G105800 [exp] 164 / 1e-41 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 163 / 4e-41 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 162 / 6e-41 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 161 / 1e-40 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 142 / 1e-34 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019313 [exp] 1177 / 0 AT4G37270 1101 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10011510 [exp] 1036 / 0 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10006955 [exp] 176 / 3e-45 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 175 / 8e-45 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10023777 [exp] 172 / 5e-44 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10008309 [exp] 147 / 4e-36 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 143 / 1e-34 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 142 / 1e-34 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038070 [exp] 130 / 1e-30 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10036225 [exp] 124 / 1e-28 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G049000.7 pacid=42765424 polypeptide=Potri.007G049000.7.p locus=Potri.007G049000 ID=Potri.007G049000.7.v4.1 annot-version=v4.1 ATGGAAACCACCACTCTCCGTCACGCGATTGGCGTCACCGACTTCCCTTCACCATCCCTCTCACTCTCTGCTGCTGCTAATAATAATTATTATTATCATT CCTCCAAATTACTTGTACGAAAACGAGTCATTTACCATCAATCTTCCCTTTCTTCCAAATTTCCCTTCAATTCCCTCTCTCATCCTCCCAGATCCACCAA TTTCAACCACCGCTTCATCCTTCGCGCCACCGGCCACGACCACCACCACGACCACCATGACCACGATCATGACCACTGCTGTCATCACCATCACCATGAA GGAGGCCATGATTCGCAACTGACTGGACCCCAAAGAGCTCTGTTAAAATTTGCAAAAACACTAGGATGGATGGACTTAGCCAATTTGTTGAGAGAACACC TGCAACTTTGCTGCTGTTCAGCTGCTCTTTTTATCACTGCTGCTGCCTGCCCTTACATAATTCCCAAACCTGCTGTCAAACCCCTTCAAAATGCGCTCAT GCTCGTCGCCTTCCCTCTCGTTGGGGTCTCAGCATCCCTTGATGCCCTTACTGATATTGTTGGTGGGAAAGTGAACATTCATGTGTTAATGGCCCTTGCG GGTTTTGCATCCATTTTTATGGGAAATGCTTTAGAAGGAGGGTTACTTCTTGCAATGTTCAATTTAGCTCATATTGCTGAAGAGTTTTTTACGAGTCGGT CGGTGATTGATGTTAAGGAGCTGAAGGAAAATTATCCGGATTCTACGCTTGTGTTGGATGTAAATGATGACAAGCCGCCTGATGTTTCTGATTTGTCGTA TAAAAGTGTACCTGTGCATGATATAGAAGTGGGATCCTATATTTTGGTCGGAACTGGTGAGGCTGTGCCTGTAGATTGTGAAGTTTTTCAAGGTAATGCA ACAATTACCATTGAGCACTTGACTGGAGAAGTCAAACCATTAGAGGCAAAAGTTGGAGACAGAATTCCTGGTGGTGCAAGGAATGTGGATGGAAGAATGA TTGTCAAGGCCACTAAAACGTGGAAAGAGTCAACATTGAGTAGGATTGTGCAATTGACTGAAGAAGCACAATCAAGTAAGCCAAAACTTCAAAGGTGGCT GGATGAATTTGGTGAGCAATACAGCAAAGTTGTTGTGGGTTTGTCAATTGCCATTGCTCTCCTTGGGCCATTTCTTTTCAAGTGGCCATTCATGAGTACA TCAGTTTGCAGAGGATCAGTCTACAGAGCACTGGGTCTGATGGTGGCAGCATCACCATGTGCCTTGGCTGTAGCTCCTTTGGCATATGCCACTGCTATCA GTTCCTGTGCAAGAAAGGGGATATTGCTTAAAGGAGGCCAGGTTCTAGATGCTTTAGCTTCCTGCCACACCATAGCATTTGACAAAACTGGAACATTGAC AACTGGGGGGCTAATGTTCAAAGCTATCGAACCAATTTATGGGCATCTGATCAGAAACAACAGGACAAATTTCACTTCTTGTTGCATTCCCAGTTGTGAA AAGGAAGCTCTTGCTGTAGCAGCTGCTATGGAAAAGGGCACTACTCACCCTATTGGAAGAGCTGTTGTGGATCATAGTATAGGCAAAGATCTACCTTCTG TTTCTGTGGACAGTTTTGAATATTTTCCCGGTAAAGGTCTTGTTGCTACTCTGAATAACATTGAGTCAGGAACTGGAGGGGGTAAATTGCTGAAAGCATC TCTTGGTTCTGTAGAGTTCATTGCTTCACTTTGTAAATCTGAAGATGAATCAAGAAAGATAAAGGAAGCAGTTAATGCATCTTCTTATGGAAGAGATTTT GTTCATGCTGCTCTTTCTGTTGAAGAAAAGGTAACATTGATCCACCTTGAGGATAGACCACGACCAGGGGTTTCAGATGTCATATCTGAATTGCAAGATC AAGCAAGGTTCCGAGTAATGATGTTAACTGGTGACCATGAATCAAGTGCATGGAGAGTTGCAAAAGCAGTGGGCATCTCTGAAGTTTACTGCAGCCTGAA GCCAGAGGACAAGCTTAATCAAGTTAAGGGTATCTCGAGGGATATGGGGGGAGGTCTGGTCATGGTTGGTGAAGGTATTAATGATGCACCGGCACTTGCT GCTGCAACTGTAGGGATTGTGCTTGCTCAACGGGCCAGTGCAACTGCCATAGCTGTTGCCGATGTTCTACTGCTAAGGGATACCATTTCTGGTGTTCCAT TCTGTATTGCCAAGTCTCGCCAAACAACTTCCCTGATCAAGCAAAATGTGGCCCTTGCATTAACTTCAATATTTCTGGCCTCCCTTCCATCTGTTTTGGG GTTTCTTCCCCTCTGGTTGACGGTTCTTTTACATGAAGGTGGCACTCTTCTCGTGTGCCTCAATTCCATACGTGCTCTGAATGATCCCAAATGGTCCTGG AGGTATGATTTGCAGCAAGTTGTAGAGAAACTGAAATCCAGAGTGATGTTAAAGGTGACAGGTGACACAAGCTCAAGCACCGTGGAGGCAGCACCTTTGT GA
AA sequence Show only first row Show all	>Potri.007G049000.7 pacid=42765424 polypeptide=Potri.007G049000.7.p locus=Potri.007G049000 ID=Potri.007G049000.7.v4.1 annot-version=v4.1 METTTLRHAIGVTDFPSPSLSLSAAANNNYYYHSSKLLVRKRVIYHQSSLSSKFPFNSLSHPPRSTNFNHRFILRATGHDHHHDHHDHDHDHCCHHHHHE GGHDSQLTGPQRALLKFAKTLGWMDLANLLREHLQLCCCSAALFITAAACPYIIPKPAVKPLQNALMLVAFPLVGVSASLDALTDIVGGKVNIHVLMALA GFASIFMGNALEGGLLLAMFNLAHIAEEFFTSRSVIDVKELKENYPDSTLVLDVNDDKPPDVSDLSYKSVPVHDIEVGSYILVGTGEAVPVDCEVFQGNA TITIEHLTGEVKPLEAKVGDRIPGGARNVDGRMIVKATKTWKESTLSRIVQLTEEAQSSKPKLQRWLDEFGEQYSKVVVGLSIAIALLGPFLFKWPFMST SVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHLIRNNRTNFTSCCIPSCE KEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSVDSFEYFPGKGLVATLNNIESGTGGGKLLKASLGSVEFIASLCKSEDESRKIKEAVNASSYGRDF VHAALSVEEKVTLIHLEDRPRPGVSDVISELQDQARFRVMMLTGDHESSAWRVAKAVGISEVYCSLKPEDKLNQVKGISRDMGGGLVMVGEGINDAPALA AATVGIVLAQRASATAIAVADVLLLRDTISGVPFCIAKSRQTTSLIKQNVALALTSIFLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNDPKWSW RYDLQQVVEKLKSRVMLKVTGDTSSSTVEAAPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.007G049000 [exp]	0	1
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	7.68	0.9394
AT5G56840	MYB		myb-like transcription factor ...		Potri.006G150300 [exp]	18.00	0.8849
AT5G48830			unknown protein		Potri.002G241200 [exp]	18.49	0.9148
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	18.73	0.9193
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.014G085700 [exp]	23.06	0.9241	ANTR2.2
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.005G207200 [exp]	24.59	0.9125
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	26.60	0.9186
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	27.92	0.9167
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.007G100200 [exp]	30.98	0.8910
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	43.35	0.9155

Compare expression of checked genes

Potri.007G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.