Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37280 419 / 2e-148 MRG family protein (.1) AT1G02740 290 / 2e-97 MRG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022400 [exp] 309 / 9e-105 AT1G02740 314 / 2e-106 MRG family protein (.1) Potri.002G122500 [exp] 136 / 3e-39 AT4G37280 147 / 1e-43 MRG family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011511 [exp] 440 / 2e-156 AT4G37280 449 / 5e-160 MRG family protein (.1) Lus10019312 [exp] 286 / 3e-97 AT4G37280 283 / 4e-96 MRG family protein (.1) Lus10019311 [exp] 94 / 3e-24 AT4G37280 107 / 4e-30 MRG family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05712 [poplar] [flax] MRG MRG CL0049 [poplar] [flax] Tudor PF11717 [poplar] [flax] Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence Show only first row Show all	>Potri.007G049300.7 pacid=42765812 polypeptide=Potri.007G049300.7.p locus=Potri.007G049300 ID=Potri.007G049300.7.v4.1 annot-version=v4.1 ATGGGGAGCTCATCGAAGGACGATTCCGGCAGCGACGCCGAGGCTTCAAGCGGCGACAAAACACCTTCTAATTCCAGTCTCTTCTCCGAAGGCGAGCGCG TCCTCGCCTACCACGGACCCCGCATCTACGAGGCCAAGGTTCAAAAAGCTGAGCTTCGTAAGAAGGAATGGAGATACTTCGTCCACTACCTTGGTTGGAA TAAAAATTGGGACGAATGGGTAGGCATGGACCGACTAATGAAACACACTCCGGATAATGTCTTGAAGCAGCAGGCCCTAGAGAAAAAACAAGGTGTAGAC AAGAGTTTGAAGCCTGGACGTTCTTCTCAGACGAAGCCAAAAAACTCTACTGATTCAAAGATGGACAAGGAAGATCCTAAAAGCAATGTGGCAAAAGGGA AGAAGCGTAAAAGTGATTCAGGAATGGAGAAGGATAATTTGCCTGTAGAAAAGCTTGTCAAGATCCAAATTCCATCAACACTAAAGAAGCAACTTGTTGA TGATTGGGAATTTGTCACCCAGCAGGATAAGTTTGTTAAACTTCCCCGGTCACCAAATGTGGATGATATTTTGACAAAGTACCTAGAATATATGTCGAAG AAGGATGGCATGATAACTGATTCCATTGGAGAAATTTTGAAAGGCATACGGTGTTATTTTGACAAAGCATTGCCTGTGATGCTACTATACAAAAAAGAGC GTCAACAATATCATGATACTGTCAAAATTGATGTATCTCCATCGACTATATATGGTGCTGAACATTTGCTGAGGCTCTTTGTTAAATTACCAGAGCTCTT GGCCTATGTGAACATTGAAGAGGATACATCAACCCGCTTGCAACAGAAATTACTCGACTTTCTCAAATTTCTACATAAGAACCAAAGTACTTTCTTCCTT TCAGCTTATGATGGATCTAAAGTTTCTGAAGGCAAAGTCAAAGGGAAAGATTAG
AA sequence Show only first row Show all	>Potri.007G049300.7 pacid=42765812 polypeptide=Potri.007G049300.7.p locus=Potri.007G049300 ID=Potri.007G049300.7.v4.1 annot-version=v4.1 MGSSSKDDSGSDAEASSGDKTPSNSSLFSEGERVLAYHGPRIYEAKVQKAELRKKEWRYFVHYLGWNKNWDEWVGMDRLMKHTPDNVLKQQALEKKQGVD KSLKPGRSSQTKPKNSTDSKMDKEDPKSNVAKGKKRKSDSGMEKDNLPVEKLVKIQIPSTLKKQLVDDWEFVTQQDKFVKLPRSPNVDDILTKYLEYMSK KDGMITDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDTVKIDVSPSTIYGAEHLLRLFVKLPELLAYVNIEEDTSTRLQQKLLDFLKFLHKNQSTFFL SAYDGSKVSEGKVKGKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37280			MRG family protein (.1)		Potri.007G049300 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Potri.013G027500 [exp]	1.41	0.7718
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.008G132900 [exp]	6.00	0.6944
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.017G044700 [exp]	6.00	0.7049
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	7.00	0.6773	ARP8.2,ARP908
AT2G02410			unknown protein		Potri.003G046600 [exp]	7.07	0.7063
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	7.41	0.7005
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.017G114000 [exp]	9.79	0.6023
AT4G14385			unknown protein		Potri.005G223900 [exp]	20.68	0.7008
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.012G040700 [exp]	23.95	0.6460	GBP.6
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.004G226600 [exp]	26.55	0.6430

Compare expression of checked genes

Potri.007G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.